Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0056 ATGTTAGGGCTATTTGACAAGAGCCACAAGATCAAGGGCACCGTGGTGTTGATGCCCAAGAATGTCTTGGACGTTAACGAGTTGAATTCAGTAAGAAGTGGAGGAGTTGGTGGTGTTGTCTCCGGCCTCTTCGGCGCTGTCGCCGACGTAACCGGTCAGGTAGTTGATACTGCAACTGCCATCCTTTCCCGGAACGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAAGGGAAATGGGAAAGTTGGAAAGGAAACTTATCTGGAGAAGCATCTTCCGACGTTACCAACCTTGGGAGATAGGAGAGATGCATACGGTATTCATTTTGAATGGGATGCTAACTTTGGAATTCCAGGAGCAATTTACATCAGAAACTATACGTATGATGAGTTCTTCCTTGTCAGTGTCACTCTTGAGGACATTCCAAATCAAGGAACCATTCACTTTGTTTGTAACTCATGGGTTTACAACTTTAAAGACTACGACAAAAAGGATCGCATTTTCTTTGCCAATAAGACATATCTTCCAAGTGCAACACCAGGTCCATTAGTTAAGTACAGGGAAGAAGAGTTGGAGATTTTAAGAGGAAATGGAACCGGAGAGCGCAAGGAACATGAAAGGATCTATGATTATGATGTCTATAATGATTTGGGTAACCCAGATAAAGATGTAAAGCTTGCACGCCCAGTCCTTGGAGGTTCCAGCACCTATCCTTATCCTCGTAGGGTTAGAACTGGCAGAAAAGCCACCAAGAAAGATCCTAAAAGCGAGAGACCTGCAAGCGAGCTTTACATGCCAAGAGATGAAAAATTCGGTCACTTAAAGTCATCAGATTTCCTCACATATGGAATAAAATCATTATCTCAAACACTCTTACCTTCGCTGGAAAACATTTTTGACTCAGACCTCACATGGAATGAATTTGATAGCTTTGAAGAAGTGAGAGACCTGTATGAAGGTGGAATTAAGGTGCCAACAGATGTTCTTAGCGACATTAGCCCCATACCTGTCTTCAAGGAAATCTTCCGCAGTGATGGGGAAAGTGTCCTTCAATTTCCACCACCTCATGTAGTCCAAGTTAGTAAATCTGCATGGATGACTGATGATGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCAAATGTAATCCGCCTTCTTAAAGAGGTCCCACCACAAAGCAAGCTGGACCCCACTCTCTATGGTGATCAATCTAGTACAATATCCAAAGAACATTTGGAGATTAACATGGGTGGGGTTACTGTAGAAGAGGCACTTAATGGTCAGAGATTATTCATATTAGATTATCACGACGCATTCATGCCATATTTGACAAGGATAAACGCCCTACCCACTGCAAAGGCTTATGCAACAAGGACAATCCTGTTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATCGAATTGAGCAAGCCACATCCAAGTGGAGATAATTTGGGTGCCGAGAGCAAAGTGGTCTTGCCTGCAGACCAAGGTGTTGAAAGCACAATTTGGCTTTTGGCCAAGGCTCATGTTATTGTAAATGACTCCGGCTATCATCAGCTCATGAGCCACTGGTTAAATACTCATGCAGTGACGGAGCCATTCATCATAGCAACTAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGCGACACCATAAATATCAATGGACTTGCTAGGAATGCCCTAATTAATGCTGGTGGCATTATAGAGGAATCATTTTTGCCTGGACGATACTCTCTTGAGATGTCTTCAGCTGTTTACAAGAACTGGGTTTTCACTGACCAAGCATTACCAGCCGATCTCATCAAGAGAGGATTGGCAGTTGAGGATCCCTCTGCACCCCATGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTCCATGAGTATGTCTCCTTGTATTACCCAACAGATGATGCAATTAAGAAAGACTCTGAACTCCAAGAGTGGTGGAAGGAAGCTGTTGAGAAGGGTCATGGTGACTTGAAAGACAAGCCTTGGTGGCCTAAAATGCAGACTCGTCAAGAGCTTATTCAATCATGTTCTACTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATATCCCTATGGTGGTTTTATCCTGAACCGTCCAACTCTTAGCAGAAGATGGATACCAGAACCAGGAACCAAAGAGTATGATGAGATGGTGAAGAGTCCCCAAACGGCTTATTTGAGAACTATCACGCCGAAGCGCCAGACCATTATTGATCTCACAGTCATAGAGATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGGGAGAGAGACAATCCAAATTGGACATCTGATTCAAAGGCATTAGAATCCTTCAAAAAGTTTGGAAGCAAGCTGGCAGAAATTGAGGGAAAAATCACAGCGAGAAACAATGATTCCAACAAGAAAAACCGATATGGACCTGTTCAGCTACCATACACATTGCTCCTTCCTACAAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2604 0.4336 MLGLFDKSHKIKGTVVLMPKNVLDVNELNSVRSGGVGGVVSGLFGAVADVTGQVVDTATAILSRNVSFKLISATSTDAKGNGKVGKETYLEKHLPTLPTLGDRRDAYGIHFEWDANFGIPGAIYIRNYTYDEFFLVSVTLEDIPNQGTIHFVCNSWVYNFKDYDKKDRIFFANKTYLPSATPGPLVKYREEELEILRGNGTGERKEHERIYDYDVYNDLGNPDKDVKLARPVLGGSSTYPYPRRVRTGRKATKKDPKSERPASELYMPRDEKFGHLKSSDFLTYGIKSLSQTLLPSLENIFDSDLTWNEFDSFEEVRDLYEGGIKVPTDVLSDISPIPVFKEIFRSDGESVLQFPPPHVVQVSKSAWMTDDEFAREMIAGVNPNVIRLLKEVPPQSKLDPTLYGDQSSTISKEHLEINMGGVTVEEALNGQRLFILDYHDAFMPYLTRINALPTAKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGAESKVVLPADQGVESTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVTEPFIIATNRRLSVLHPIYKLLYPHYRDTININGLARNALINAGGIIEESFLPGRYSLEMSSAVYKNWVFTDQALPADLIKRGLAVEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDDAIKKDSELQEWWKEAVEKGHGDLKDKPWWPKMQTRQELIQSCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRWIPEPGTKEYDEMVKSPQTAYLRTITPKRQTIIDLTVIEILSRHASDEIYLGERDNPNWTSDSKALESFKKFGSKLAEIEGKITARNNDSNKKNRYGPVQLPYTLLLPTSEEGLTFRGIPNSISI* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0056 867 Gene3D - 277 365 IPR027433 -
Gso7g0056 867 SUPERFAMILY Lipoxigenase 177 867 IPR036226 -
Gso7g0056 867 Gene3D PLAT/LH2 domain 1 176 - -
Gso7g0056 867 Gene3D - 501 866 - -
Gso7g0056 867 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Gso7g0056 867 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Gso7g0056 867 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Gso7g0056 867 SMART LH2_4 9 173 IPR001024 GO:0005515
Gso7g0056 867 MobiDBLite consensus disorder prediction 243 265 - -
Gso7g0056 867 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 867 - -
Gso7g0056 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Gso7g0056 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 867 IPR013819 GO:0016702|GO:0046872
Gso7g0056 867 PANTHER LIPOXYGENASE 1 867 IPR000907 GO:0016702|GO:0046872
Gso7g0056 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 176 IPR036392 GO:0005515
Gso7g0056 867 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Gso7g0056 867 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Gso7g0056 867 Pfam Lipoxygenase 185 850 IPR013819 GO:0016702|GO:0046872
Gso7g0056 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Gso7g0056 867 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Gso7g0056 867 Gene3D - 177 276 - -
Gso7g0056 867 Pfam PLAT/LH2 domain 75 171 IPR001024 GO:0005515
Gso7g0056 867 CDD PLAT_LH2 9 173 IPR042057 -
Gso7g0056 867 Gene3D - 366 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0056 Gso-Chr7 492157 497930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0056 8 867 Acyl Lipid Metabolism Gene Families AT1G55020 55.505 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0056 K15718 - gmx:100781402 1744.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0056 7 492157 497930 Gso8g1570 8 15285068 15304313 GST
Gso15g0234 15 2138494 2142470 Gso7g0056 7 492157 497930 PCT