Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2518 ATGGTCGTAAATCTCTCTCCCTCTCCCTCTCCACCTTTACATTCCAGTTCCATAATCAGATTGGCAAATTCAAAGTCACCCATTTCAGAACCATGGTTGAGACTCAAAACCCACTTCCCAAAACCACTCCTTTCCCCAACAAGTGTGAACTTCACTTGCAACAAGAATCAATTTTTGCACGGTAAAAACAGGAACAGGTTGGATTTCAGGACTTGGTCTATTGCTGGTTTTGATTATGGAAACTTTGAAGGGCCTCAGTCTGTGCTTGAGGCTGCTGCAGTGTTGACAGCAATCATTGTTGTGCATGAGAGTGGCCACTTCCTTGCTGCTTCTCTCCAAGGAATCCATGTGAGTAAGTTTGCTGTTGGTTTTGGTCCAGTTTTAGCAAAGTTTAACGCCAAAAATGTTGAATATTCCATCAGGGCTTTCCCCCTTGGTGGCTTTGTGGGGTTCCCTGATAATGATCCAGAGAGTGATATCCCTGTTGATGATGAAAATTTGCTTAAGAACAGACCAATATTGGATAGGGTGATTGTGGTTTCAGCTGGTGTTGTTGCTAACATCATTTTTGCATTTGTTATTATCTTTGCACAAGTCCTGTTTGTTGGTTTGCCTGAGCAAGAGGTGTTTCCTGGGGTGGTTGTGCCTGATGTCAGACCTTTTTCAGCTGCTTCAAGAGATGGGTTGGTTCCTGGGGATGTGATCCTTGAGGTCAATGGAAGTGAGTTTCCAAAACCAGGTCCTAGTGCTGTTTCTGAAGTTGTTGATGCCATCAAGAGGAACCCCAAGAGATATGTTTTGCTCAAGATTAAAAGGGGGGAGCAGAATTTTGATATAAGGGTCACCCCAGATGAGAATTTTGATGGAACCGGGAAAATTGGAGTTCAGCTAGCCCCTAATGTTAAGATAGCTAAGGTTAGGCCAAAAAATCTGGTGCAGGCTGTGGAGTTTACTGGGCAAGAGTTTTGGGGTCTGGCATCTAATGTTTTAGATGGGCTAAAGCAGACTTTTTTGAACTTCTCCCAGTCAGCTAGTAAGGTTTCGGGTCCTGTAGCCATCATTGCTGTTGGTGCAGAAGTGGCGCGGTCGAATATTGATGGTCTCTTCCAGTTTGCTGCGATACTTAATATTAACCTTGCGGTTATAAACCTTCTTCCTTTGCCTGCTTTGGATGGAGGTACATTGGCATTGATCCTCATTGAGGCTGCTAGGGGTGGGAGAAAGCTTCCTTTGGAAGTGGAGCAAACGATCATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGGTTATTCCTTATTGTTCGAGATACCCTAAACCTTGATTTTATCAAAGACTTGTTGTAA 1344 0.436 MVVNLSPSPSPPLHSSSIIRLANSKSPISEPWLRLKTHFPKPLLSPTSVNFTCNKNQFLHGKNRNRLDFRTWSIAGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPVLAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVIVVSAGVVANIIFAFVIIFAQVLFVGLPEQEVFPGVVVPDVRPFSAASRDGLVPGDVILEVNGSEFPKPGPSAVSEVVDAIKRNPKRYVLLKIKRGEQNFDIRVTPDENFDGTGKIGVQLAPNVKIAKVRPKNLVQAVEFTGQEFWGLASNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQTIMSSGIMLVIILGLFLIVRDTLNLDFIKDLL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2518 447 SMART pdz_new 197 274 IPR001478 GO:0005515
Gso6g2518 447 CDD S2P-M50_PDZ_RseP-like 88 439 - -
Gso6g2518 447 Pfam PDZ domain 214 272 IPR041489 -
Gso6g2518 447 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 30 447 - -
Gso6g2518 447 SUPERFAMILY PDZ domain-like 207 285 IPR036034 GO:0005515
Gso6g2518 447 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 30 447 IPR004387 GO:0004222|GO:0006508|GO:0016021
Gso6g2518 447 CDD PDZ_metalloprotease 200 283 - -
Gso6g2518 447 Pfam Peptidase family M50 92 428 IPR008915 GO:0004222|GO:0006508
Gso6g2518 447 Gene3D - 204 298 IPR036034 GO:0005515
Gso6g2518 447 ProSiteProfiles PDZ domain profile. 212 273 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2518 Gso-Chr6 46921223 46924534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2518 - - gmx:100796242 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0807 12 8487083 8491480 Gso6g2518 6 46921223 46924534 GST