Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0807 ATGGTCGTAAATCTCTCTCCCTCTCCACCTTTACATTCAAGTTCCATAATCAGATTGGCAAATTCAAAGTCACCCATTTCAGAACCATGGTTGAGGCTCAAAACCCACTTCCCAAAACCGCTCCTTTCCCCTTCTTTTGCCTCCCCAAGTGTGAACTTCACTTGCAAGAAGCAATTTTTGCATGGTAACAGCAGGAACGTGTTGGATTTCAGGACTTGGTCTATTGCTGGGTTTGATTATGGGAACTTTGAGGGGCCTCAGTCTGTGCTTGAGGCTGCTGCAGTGTTGACAGCCATCATTGTTGTACATGAGAGTGGCCACTTCCTTGCTGCTTCTCTCCAAGGAATCCATGTGAGTAAGTTTGCTGTAGGGTTTGGTCCAATTTTAGCAAAGTTTAATGCCAAAAATGTTGAATATTCCATCAGGGCTTTTCCCCTTGGTGGCTTTGTGGGGTTCCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGAAAACCTGCTTAAGAATAGACCAATATTGGATAGGGTGATTGTGGTTTCAGCTGGTGTTGTTGCTAACATAATTTTTGCATTTGCTATTATCTTTGCACAAGTCCTGTCTGTTGGTTTGCCTGAGCAAGAGGTCTTTCCTGGGGTGGTTGTGCCGGATGTTAGAGCCTTTTCTGCTGCTTCAAGAGATGGGTTGGTTCCTGGGGATGTGATCCTTGAGGTCAATGGAAGTGAGTTTTCAAAACCAGGTCCAAGTGCGGTTTCTGAAGTTGTTGATGTTATCAAGAGGAACCCCAAGAGATATGTTTTGCTCAAGATTAAAAGGGGGGAGCAGAATTTTGATATAAGGGTCACCCCAGATGAGAATTTTGATGGAACTGGGAAAATTGGAGTTCAGCTAGCCCCTAATGTGAAGATAGCTAAGGTTAGGCCAAAAAATTTGGTGCAGGCTGTGGAGTTTACTGGGCAAGAGTTTTGGGGTCTGGCCTCTAATGTTTTAGATGGGTTAAAGCAGACTTTTTTGAACTTCTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCTGAAGTGGCACGGTCAAATATCGATGGTCTCTTCCAGTTTGCCGCGATACTCAACATTAACCTTGCGGTTATAAACCTTCTGCCTTTGCCTGCTTTAGATGGAGGCACATTGGCATTGATCCTAATTGAGGCTGCCAGGGGTGGGAGAAAGCTACCTTTGGAAGTGGAGCAAACGATCATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGGTTATTCCTTATTGTTCGTGATACCCTAAACCTTGATTTTATCAAAGACTTGTTGTAA 1347 0.4395 MVVNLSPSPPLHSSSIIRLANSKSPISEPWLRLKTHFPKPLLSPSFASPSVNFTCKKQFLHGNSRNVLDFRTWSIAGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVIVVSAGVVANIIFAFAIIFAQVLSVGLPEQEVFPGVVVPDVRAFSAASRDGLVPGDVILEVNGSEFSKPGPSAVSEVVDVIKRNPKRYVLLKIKRGEQNFDIRVTPDENFDGTGKIGVQLAPNVKIAKVRPKNLVQAVEFTGQEFWGLASNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQTIMSSGIMLVIILGLFLIVRDTLNLDFIKDLL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0807 448 CDD PDZ_metalloprotease 201 284 - -
Gso12g0807 448 ProSiteProfiles PDZ domain profile. 213 274 IPR001478 GO:0005515
Gso12g0807 448 SMART pdz_new 201 275 IPR001478 GO:0005515
Gso12g0807 448 Pfam PDZ domain 215 273 IPR041489 -
Gso12g0807 448 Gene3D - 205 299 IPR036034 GO:0005515
Gso12g0807 448 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 27 448 IPR004387 GO:0004222|GO:0006508|GO:0016021
Gso12g0807 448 CDD S2P-M50_PDZ_RseP-like 89 440 - -
Gso12g0807 448 Pfam Peptidase family M50 93 429 IPR008915 GO:0004222|GO:0006508
Gso12g0807 448 SUPERFAMILY PDZ domain-like 208 286 IPR036034 GO:0005515
Gso12g0807 448 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 27 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0807 Gso-Chr12 8487083 8491480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0807 - - gmx:100800101 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0807 12 8487083 8491480 Gso6g2518 6 46921223 46924534 GST