Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2478 ATGTTACTCCTTAAAACAACCGCAACCCTTCTTCCCAAACCTTGTTCCACCATCACCACCCTTGATTCTCTACAATGTGGAACTTTACTCCAATCACTCACCAACTCCAAATCCTTAACTCAAGCCCTACAACTCCACGCTAACGTCACCACCGGCGGCACCCTCAGCCGCAACACCTACCTCGCCACTAAACTCGCTGCGTGCTACGCCGCATGCGGCCACATGCCCTACGCTCAACACATCTTCCACCAAATCGTGCTAAAGAACTCATTCCTCTGGAATTCCATGATCAGGGGCTACGCCTGCAACAACTCTCCATCCAAAGCCCTTGTTTTATACCGCGAAATGCTGCATTTTGGACATAAGCCCGATAATTTCACCTACCCTTTTGTCCTCAAGGCATGTGGGGACCTTTTGCTTCGGGAAATTGGTGGAAAGGTTCATGCTTTGGTGGTGGTCGGTGGGTTGGAAGAGGATGTTTATGTGGGCAACTCGATACTCTCGATGTACTTCAAGTTTGGTGACGTGGCAGCTGCGCGGGTGATGTTTGATAAAATGCCTGTGAGGGACTTGACTTCTTGGAACACTATGATGTCGGGGTTTGTGAAAAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTTGGGGATATGAGAAGGGATGGTTTTGTGGGAGATGGGATCACCTTGCTTGCACTTTTATCTGCCTGTGGGGATGTTATGGATTTGAAGGCGGGGAGAGAAATTCATGGTTATGTTGTTAGGAATGGTGGGAATAGGAGACTGTGTAATGGGTTTTTGATGAATTCAATTATTTGCATGTACTGCAATTGTGAGTCTATGTCCTTTGCAAGGAATTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCAGGGTATGAGAAGTGCGGGGATGCTTTTCTAGTTCTTGAGCTTTTCGGTCGAATGGTTGTAGTTGGTGCAGTGCCTGATGAGGTGACTGTGACTTCTGTGCTTGGGGCTTGTAATCAAATCTCGGCATTGCGATTGGGTGCCAGTGTGCAGTCATATGTTGTTAAGAGGGGTTATGGAGTGAATGTTGCTGTGGGAACGGTGCTTAGTGTTTGA 1122 0.4742 MLLLKTTATLLPKPCSTITTLDSLQCGTLLQSLTNSKSLTQALQLHANVTTGGTLSRNTYLATKLAACYAACGHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALVLYREMLHFGHKPDNFTYPFVLKACGDLLLREIGGKVHALVVVGGLEEDVYVGNSILSMYFKFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDGITLLALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMYCNCESMSFARNLFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACNQISALRLGASVQSYVVKRGYGVNVAVGTVLSV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2478 373 Pfam PPR repeat 193 222 IPR002885 -
Gso6g2478 373 Pfam PPR repeat 164 189 IPR002885 -
Gso6g2478 373 TIGRFAM PPR: pentatricopeptide repeat domain 92 124 IPR002885 -
Gso6g2478 373 TIGRFAM PPR: pentatricopeptide repeat domain 193 225 IPR002885 -
Gso6g2478 373 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Gso6g2478 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Gso6g2478 373 Pfam PPR repeat family 293 340 IPR002885 -
Gso6g2478 373 Pfam PPR repeat family 88 135 IPR002885 -
Gso6g2478 373 Gene3D Tetratricopeptide repeat domain 260 349 IPR011990 GO:0005515
Gso6g2478 373 Gene3D Tetratricopeptide repeat domain 15 140 IPR011990 GO:0005515
Gso6g2478 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Gso6g2478 373 Gene3D Tetratricopeptide repeat domain 141 259 IPR011990 GO:0005515
Gso6g2478 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Gso6g2478 373 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 104 371 - -
Gso6g2478 373 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 44 110 - -
Gso6g2478 373 PANTHER - 104 371 - -
Gso6g2478 373 PANTHER - 44 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2478 Gso-Chr6 46505709 46506830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2478 18 368 Glycoside Hydrolase AT3G49170 27.671 7.32e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2478 - - gsj:114416370 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0842 12 9183335 9188994 Gso6g2478 6 46505709 46506830 GST