Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0842 ATGTCACTCCTTAAGACAACAGCAACCCTTATTCCCAAACCTTCTTCCACCTCTACTTTCGATTCTCTACAATGTGGAACCTTACTCCAATCCCTCACCAACTCCAAATCCTTAACCCAAGCCCTACAACTCCACGCTCACGTCACCACCGGCGGCACCCTCCGCCGCAACACCTACCTCGCCACCAAGCTCGCCGCATGCTACGCCGTCTGCGGCCACATGCCCTATGCCCAACACATCTTTGACCAAATCGTCCTCAAGAACTCGTTTCTCTGGAACTCCATGATCAGGGGCTACGCCTGCAACAACTCTCCCTCGAGGGCCCTTTTTCTATACCTCAAAATGCTGCATTTTGGACAAAAGCCTGATAACTTCACCTACCCTTTTGTCCTTAAGGCATGTGGGGACCTTCTGCTTCGCGAAATGGGTAGAAAGGTTCATGCTTTGGTGGTGGTTGGTGGGTTGGAGGAGGATGTTTATGTAGGCAACTCGATACTTTCGATGTACTTTAAGTTTGGTGACGTGGAAGCTGCGCGGGTTGTGTTTGATAGAATGCTTGTGAGGGACTTGACTTCTTGGAACACCATGATGTCGGGGTTTGTGAAGAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTTGGGGACATGAGAAGGGATGGTTTTGTGGGAGATAGGACCACCTTGCTTGCTCTTCTCTCTGCTTGTGGGGATGTTATGGATTTGAAGGTGGGGAAAGAGATTCATGGTTATGTTGTTAGGAATGGTGAGAGTGGGAGAGTCTGTAATGGGTTTCTGATGAATTCAATTATTGACATGTACTGCAATTGTGAGTCTGTGTCTTGTGCAAGGAAGTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCGGGGTATGAGAAGTGCGGGGATGCTTTTCAAGCTCTTGAGCTTTTCGGTCGGATGGTTGTAGTAGGTGCAGTGCCTGATGAGGTGACTGTTATTTCTGTGCTTGCGGCTTGTAATCAAATCTCGGCATTGCGGTTGGGCGCGACCGTGCAGTCATATGTTGTTAAGAGGGGTTATGTTGTGAATGTTGTTGTGGGAACGGCACTTATTGGCATGTATGCTAACTGTGGAAGTTTGGTTTGTGCTTGTCGTGTGTTTGATGAGATGCCTGAGAAAAATTTGCCTACTTGTACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGGAGAGAGGCCATCTCCATTTTTTATGAAATGCTAGGTAAAGGTGTGACACCAGATGAGGGCATTTTCACTGCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTGGACGAGGGTAAAGAGATTTTCTACAAAATGACTAGAGACTATAGTGTGGAGCCTAGACCAACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGATGAAGCTTATGCAGTTATAGAGAATATGAAATTGAAACCTAATGAGGATGTGTGGACTGCTCTTCTTTCTGCATGCAGATTACATCGGAATGTCAAGTTAGCCGTGATCTCGGCGCAGAAGCTTTTTGAATTGAATCCAGATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACGGTGGGAAGATGTTGAAAACGTGAGGGCATTGGTGGCAAAAAGAAGATTGAGGAAACCACCTAGTTACAGTTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTTGGGGATACTTCCCATGAACAGTCGGATGATATTTATGCCAAATTGAAAGACTTGAATGAGCAACTGAAGAAAGCTGGATACAAACCTGACACCAGTTTAGTTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAATACTGGTCCGGGGACCACTATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACGGTAATAAAAATGATTTCTAAGCTCACAAATCGGGAGATTATTATGCGAGATATTTGTAGGTTTCACCATTTTAGAGATGGCTTATGCTCATGTGGTGGATATTGGTGA 2106 0.4511 MSLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPTCTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0842 701 Gene3D Tetratricopeptide repeat domain 13 137 IPR011990 GO:0005515
Gso12g0842 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Gso12g0842 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Gso12g0842 701 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 42 104 - -
Gso12g0842 701 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 103 675 - -
Gso12g0842 701 Pfam PPR repeat 163 188 IPR002885 -
Gso12g0842 701 Pfam PPR repeat 192 221 IPR002885 -
Gso12g0842 701 Pfam PPR repeat 368 394 IPR002885 -
Gso12g0842 701 Pfam DYW family of nucleic acid deaminases 609 701 IPR032867 GO:0008270
Gso12g0842 701 PANTHER - 42 104 - -
Gso12g0842 701 PANTHER - 103 675 - -
Gso12g0842 701 Pfam E motif 511 573 IPR046848 -
Gso12g0842 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 464 IPR002885 -
Gso12g0842 701 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Gso12g0842 701 TIGRFAM PPR: pentatricopeptide repeat domain 163 189 IPR002885 -
Gso12g0842 701 TIGRFAM PPR: pentatricopeptide repeat domain 192 224 IPR002885 -
Gso12g0842 701 TIGRFAM PPR: pentatricopeptide repeat domain 295 329 IPR002885 -
Gso12g0842 701 TIGRFAM PPR: pentatricopeptide repeat domain 91 123 IPR002885 -
Gso12g0842 701 Gene3D Tetratricopeptide repeat domain 259 353 IPR011990 GO:0005515
Gso12g0842 701 Gene3D Tetratricopeptide repeat domain 138 258 IPR011990 GO:0005515
Gso12g0842 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Gso12g0842 701 Pfam PPR repeat family 292 339 IPR002885 -
Gso12g0842 701 Pfam PPR repeat family 87 134 IPR002885 -
Gso12g0842 701 Gene3D Tetratricopeptide repeat domain 411 576 IPR011990 GO:0005515
Gso12g0842 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Gso12g0842 701 Pfam E+ motif 578 601 IPR046849 -
Gso12g0842 701 Pfam Pentacotripeptide-repeat region of PRORP 413 508 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0842 Gso-Chr12 9183335 9188994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0842 77 701 Glycoside Hydrolase AT3G49170 37.382 2.34e-142 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0842 - - gmx:100817006 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0842 12 9183335 9188994 Gso6g2478 6 46505709 46506830 GST