Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2472 ATGTTTCGGTTTTCTTGTTTCCATGCTAATGCCCAAGGCAACAAGGCAAAGAAAACGGTTCAACCTTCTACTGAAGCAATGGAAAAGGGTTTGCAAGATGGTACCCAAAATCATGGCTGTAAAGAGTCATCTAATCCTCCGAGAACATATTCATCCCCTTCGAAAGAACAAGCACACAAGCAAATAAATATCACGGAGAATCATATTAGCAATTGGGATTCAGTTGAGTGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAATGAAAGCAACGTTCACCAAACTAGGCGTATTAGGAAGAGCCAGTCTCTTCAAAGTGGGCTTGACCAAGGCATAAGGGAAGGTGATGAAGATCTTGGGTTGTCTTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGAAGGTATCATAATCCAAATGTTGAGTTTCAAGTCTGTTCAGGTCTTCTAAATGATGTCTCAATTTTTTCAATTGGAGACCCTATACCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCATTATCTGGTGAATTTGCTGGTAACATTCCTGACCAGACTTCTGTTCCTGGTATCGTATCTCTTAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAAAGATGCTTTTAAACATGCAATGTCAAGATCTTCTGATGATCTTCATGCTTTACGCATGAGGCAGAAAGAGGAATTCATCAATGAGTTTCATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGAAATGGAAAAACCTGAAGATGGTCATATGGACAATTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAGAAAACTGGGTAATGCCAATTACAGATGATTCAAGTGATGTCAAAACCCTTCAAGGAGATTCCTCAGTTCACTGTGTGGGTGAATTTCCTAAGAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAGTTGGTTTGCAGCATTGTGGACCACCTCTAGAGGAAACAAATGAAGATTTGTCTAAAGTTATTGAACCTTTAGTTGATGTTAACACAGTAAATGGCGTGACAGCTGCCAGTGTGGATAATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATTTCTTCTCTGGGTGCTAATGCCACTGCCGCTCAGCTAGGAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTCAACTTGGCTGGAAATGCTATTGTGAGGATAACTGCTGGTGCTCTTCCTCGTGGACTTCATGCCTTGAATTTGTCTAGAAACAAGATCTCCACTATAGAAGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTTTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTTTTGAAACTAAGTATCCTGGATCTCTCTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTACAATACTTTGCAAGCTATCAACTTGGATGGGAATCCAGCCCAGAAAAATGTTGGAGATGAACATATGAAGAAATATCTACAAGGCCTTCTTCCCCATCTTGTCTACTATAATCGGCAGCCTATGAAAGTGAGCTCTTTGAAGGATGGAGCAGAACGTTCAGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCGGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGCAGCCACACGGAGGCCATCAATCACGTCTACTCATGCTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAGGGTAAGCAGCCTCTCCTGCCACCAACTAGAACCAAAGTATCAACCCAAAGTCGCTATCATTTTGATGCTCCCGACAAAGCATTGAACTTGGTTTCAGAGCTCTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTCTGTAA 2040 0.4206 MFRFSCFHANAQGNKAKKTVQPSTEAMEKGLQDGTQNHGCKESSNPPRTYSSPSKEQAHKQINITENHISNWDSVECSCRSEDLNSKFSFENESNVHQTRRIRKSQSLQSGLDQGIREGDEDLGLSCDGAKSQNESTISIRRYHNPNVEFQVCSGLLNDVSIFSIGDPIPSDKDAHEISDTPLSGEFAGNIPDQTSVPGIVSLRKSRSLPNIRASILSSEKDAFKHAMSRSSDDLHALRMRQKEEFINEFHDQIRGDQERENEMEKPEDGHMDNFFDDGFDSYLLSGSAENWVMPITDDSSDVKTLQGDSSVHCVGEFPKKDFKIKRIEDWVVGLQHCGPPLEETNEDLSKVIEPLVDVNTVNGVTAASVDNKVTPGMEAAKRYISSLGANATAAQLGNHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLSFNKISTAKCLGQLAANYNTLQAINLDGNPAQKNVGDEHMKKYLQGLLPHLVYYNRQPMKVSSLKDGAERSVRLGMNSHQFDRGLRADRKTTRKGSQGVAATRRPSITSTHARRSVDSPKLSKGKQPLLPPTRTKVSTQSRYHFDAPDKALNLVSELSMRKSRSEGNFGVL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2472 679 MobiDBLite consensus disorder prediction 580 651 - -
Gso6g2472 679 Gene3D Ribonuclease Inhibitor 361 550 IPR032675 -
Gso6g2472 679 ProSiteProfiles Leucine-rich repeat profile. 480 501 IPR001611 GO:0005515
Gso6g2472 679 MobiDBLite consensus disorder prediction 94 119 - -
Gso6g2472 679 ProSiteProfiles Leucine-rich repeat profile. 457 479 IPR001611 GO:0005515
Gso6g2472 679 PANTHER NISCHARIN RELATED 150 677 - -
Gso6g2472 679 MobiDBLite consensus disorder prediction 603 623 - -
Gso6g2472 679 Pfam Leucine rich repeat 413 468 IPR001611 GO:0005515
Gso6g2472 679 ProSiteProfiles Leucine-rich repeat profile. 502 523 IPR001611 GO:0005515
Gso6g2472 679 SMART LRR_sd22_2 478 499 - -
Gso6g2472 679 SMART LRR_sd22_2 433 454 - -
Gso6g2472 679 SMART LRR_sd22_2 455 477 - -
Gso6g2472 679 SMART LRR_sd22_2 500 524 - -
Gso6g2472 679 PANTHER BNAA09G01440D PROTEIN 150 677 - -
Gso6g2472 679 SUPERFAMILY Outer arm dynein light chain 1 405 567 - -
Gso6g2472 679 SMART LRR_typ_2 411 434 IPR003591 -
Gso6g2472 679 SMART LRR_typ_2 455 478 IPR003591 -
Gso6g2472 679 SMART LRR_typ_2 500 522 IPR003591 -
Gso6g2472 679 ProSiteProfiles Leucine-rich repeat profile. 435 456 IPR001611 GO:0005515
Gso6g2472 679 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2472 Gso-Chr6 46417163 46421234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2472 413 537 Receptor kinase-like Gene Family AT4G39400 35.036 6.93e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2472 - - gmx:100778703 1349.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0852 12 9351124 9355325 Gso6g2472 6 46417163 46421234 GST