Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0852 ATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCCTCTTCTGAAGCAATGGTGAAGGGTTTGCAAGATGTTACGGAAAATCATGGCTGTAAAGATTCATCTAATCTTCCATGTGCATATTCATCCCCTTCGAAAGAACAAGCACACAAGCAAATAAATGTCATGGAGAATCATAGCAATTGGGATTCTGTTGGGCGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAACGACAACAATGTTCACCAAACTAGGCATATTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGATCAAGGCATCAGGGAAGCTGATGAAGATCTTGGGTTGTCGTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGCAGAAGGTATCATGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAACGTTGAGTTTCAAGTCAGTTCAGGTCTTGCGAATGATGGCTCACTTTTTTCAATAGGAGACCCAATGCCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCGTTATCTGTTGAATTTGCTGGTGACATTCCTGACCAGACTTTTGTTCCTGGTAGCCTATTTCTAAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAGAGATGCTTTTAAACATGCATTGTCAAGATCTTCCGATGATCTTCACGCTTTACGCATGTGGCAGAAAGAGGAATTCATCAATGAGTTTGATGATCAAATAAGGGCAGATCAAGAAAGAGAGAATGACATGGGAAAACCTGAAGATGGTCGTATGGACAGTTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTAATGTCAAAACCCTTCAAGGAGATTCTTTAGTTGACTGTGCGGGTGAATTTCCTAAGAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAATTGGTTTGCAGCATTGTGGGCCACCTCTAGAGGAAACAAATGAAGATTTGCCTGAAGTTATTGAACCTTTAATTGATGTTAACACAGTAAATGGCGTGACTGCTGCCAGTGTGAATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGAGTGCTAATGCCACTGCTGCTCAGCTGGGAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTCAATTTGGCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCTCGCGGACTTCACGCATTGAATTTGTCGAGAAACAAGATCTCCACTATAGAAGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGTCTTGCATCCTGCTCATCTTTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGTATTCTGGATCTCCGTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATACTTTGCAAGCTATCAACTTGGATGGGAACCCGGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATGAAAGTGAACTCTTTGAAGGATGGAGCAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGCAGCCACAAGGAGGCCATCAACTGCTTCTACTCATGCTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAGGGCAAGCAGACTCTCCTGCCACCAACTAGAACCAAAGTATCAACCCAAAGTCGGTATCATTTTGATTCTCCCAGCAAAGTATTGAACTTGGTGTCAGAGCGCTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTCTGTGA 2070 0.4275 MFRFSCFHANVQGNKAKKTVQPSSEAMVKGLQDVTENHGCKDSSNLPCAYSSPSKEQAHKQINVMENHSNWDSVGRSCRSEDLNSKFSFENDNNVHQTRHIKKSQSLQSGLDQGIREADEDLGLSCDGAKSQNESTISISRRYHDANPIDQYGNNPNVEFQVSSGLANDGSLFSIGDPMPSDKDAHEISDTPLSVEFAGDIPDQTFVPGSLFLRKSRSLPNIRASILSSERDAFKHALSRSSDDLHALRMWQKEEFINEFDDQIRADQERENDMGKPEDGRMDSFFDDGFDSYLLSGSAKDWVMPITDDTSNVKTLQGDSLVDCAGEFPKKDFKIKRIEDWVIGLQHCGPPLEETNEDLPEVIEPLIDVNTVNGVTAASVNHKVTPGMEAAKRYISSLSANATAAQLGNHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNTLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPMKVNSLKDGAERSVRLGMNSHQFDRSLRADRKTTRKGSQGVAATRRPSTASTHARRSVDSPKLSKGKQTLLPPTRTKVSTQSRYHFDSPSKVLNLVSERSMRKSRSEGNFGVL* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0852 689 Gene3D Ribonuclease Inhibitor 371 561 IPR032675 -
Gso12g0852 689 MobiDBLite consensus disorder prediction 590 662 - -
Gso12g0852 689 ProSiteProfiles Leucine-rich repeat profile. 445 466 IPR001611 GO:0005515
Gso12g0852 689 PANTHER BNAA09G01440D PROTEIN 99 687 - -
Gso12g0852 689 MobiDBLite consensus disorder prediction 613 662 - -
Gso12g0852 689 SUPERFAMILY Outer arm dynein light chain 1 415 576 - -
Gso12g0852 689 ProSiteProfiles Leucine-rich repeat profile. 467 489 IPR001611 GO:0005515
Gso12g0852 689 SMART LRR_sd22_2 443 464 - -
Gso12g0852 689 SMART LRR_sd22_2 488 509 - -
Gso12g0852 689 SMART LRR_sd22_2 465 487 - -
Gso12g0852 689 SMART LRR_sd22_2 510 534 - -
Gso12g0852 689 PANTHER NISCHARIN RELATED 99 687 - -
Gso12g0852 689 SMART LRR_typ_2 421 444 IPR003591 -
Gso12g0852 689 SMART LRR_typ_2 510 532 IPR003591 -
Gso12g0852 689 SMART LRR_typ_2 465 488 IPR003591 -
Gso12g0852 689 ProSiteProfiles Leucine-rich repeat profile. 490 511 IPR001611 GO:0005515
Gso12g0852 689 Pfam Leucine rich repeat 423 478 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0852 Gso-Chr12 9351124 9355325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0852 - - gmx:100790061 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0852 12 9351124 9355325 Gso12g0852 12 9351124 9355325 ECH
Gso12g0852 12 9351124 9355325 Gso6g2472 6 46417163 46421234 GST