Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1253 ATGGCAATTTGTTCCTCACTTTCATCGTCATCGTCATCGTCTTCTTCTTCTACATCGTCCTTTGGTTCCTCGAGCACCGCGAAGGCGTGGATCATCCATGGCATTGTGGCCGGAGTGGCGATTGCTGCGGCGGTGGGTGCACGCGCTTACATGACTCGATTCAGCAAGTTTCGGAGCCGGGTCGTGGGCATCATACCCGCCCGATTCGCTTCCTCGCGCTTCCAGGGAAAGCCTCTCGTTCAAATCCTTGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTGGATCATATTGTTGTGGCAACTGATGATGAAAAGATTGCTGATTGCTGTCGACAATTTGGAGCTGATGTTATAATGACATCAGAATCTTGCAGAAATGGTACTGAGCGCTGCAATGAAGCCCTACAGAAGCTTGGGAAAAAATATGATATTGTTGTCAACATTCAGGGTGATGAGCCACTTATTGAACCTGAGATAATAGATGGTGTTGTGAAAGCTTTGCAGGCAGCTCCTGATGCAGTGTTCAGCACTGCAGTCACATCTTTAAAGCCTGAAGATGCACATGATCCAAATAGAGTGAAATGTGTGGTAGATAATCGTGGTTATGCCATTTATTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGAATGGTCAATCAACAGTTCCCGTATTTGCTTCATCTTGGGATTCAGAGCTACGATGCAAAGTTTCTGAATATATACCCTGATCTTCAACCTACTCCGTTGCAACTCGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTACAAGATGAAGGTGATAAAAGTTGATCATGAGGCTCATGGTGTTGACACTCCTGAAGATGTTGGAAAGATAGAATCTCTAATGCGTGAGAGGAACTTGTCTTGA 921 0.4582 MAICSSLSSSSSSSSSSTSSFGSSSTAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLAATLDHIVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKSGMVNQQFPYLLHLGIQSYDAKFLNIYPDLQPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVGKIESLMRERNLS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1253 306 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 59 301 IPR004528 GO:0008690
Gso12g1253 306 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 51 301 IPR029044 -
Gso12g1253 306 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 22 306 - -
Gso12g1253 306 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 63 293 IPR004528 GO:0008690
Gso12g1253 306 MobiDBLite consensus disorder prediction 1 21 - -
Gso12g1253 306 CDD CMP-KDO-Synthetase 60 299 IPR004528 GO:0008690
Gso12g1253 306 SUPERFAMILY Nucleotide-diphospho-sugar transferases 61 303 IPR029044 -
Gso12g1253 306 Pfam Cytidylyltransferase 63 273 IPR003329 -
Gso12g1253 306 PANTHER BNAA05G35640D PROTEIN 22 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1253 Gso-Chr12 22933375 22938123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1253 K00979 - gmx:100818593 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1253 12 22933375 22938123 Gso6g2053 6 37926606 37930800 GST