Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1790 ATGGCTCCAAATTTCTTGCACCAAGTGGCATTCCTTCTTGTGCTCTCAACTGTGGTTTCCAGTGGCTATGCTTGGGTTGGTGTGAACTGGGGAACCATGGCGACGCACCAGCTTCAACCCGAGAAGGTGGTGAAGATGCTGAAGGAAAACGGGTTCAGAAAACTGAAGCTGTTTGATGCAGACGAGTTCATTATGACGGCTCTGATGGGGACCGATATCGAAGTCATGGTGGCCATACCTAACAACATGTTGGACAAGATAAGCAATAGTCCTAAGGCTGCAGATTCTTGGGTGAATGATAATGTCACCAGTTACTTCACTGGTGTCAAAATCAAGTATGTTGCAGTGGGTAATGAGCCTTTCCTTAAAGCATATAATGGCTCCTTTGCAAAGAAAACTCTGCCAGCCCTCAAGAACATACAAACATCACTTAATAAGGCCGGGTTGGGTTCAAAGATCAAAATCACTGTTCCATTCAATGCTGACATTTACTATTCGCCCGATTCAAATCCGGTGCCATCGACCGGTGACTTCAGGCCGGAAGTGCGAGACCTCACCGTCGAAATAATCCAATTCTTATATGCAAACAATGCACCTTTCACAGTGAATATCTACCCTTTTCTTAGTCTCTATGGCAACCAAGATTTCCCTTTTGATTTTGCATTTTTTGATGGAAACAACAAGCCTCTAAGGGATGGTAAGGCACTTTACACCAATGTGTTTGATGCAAATCTTGACACACTTCTGTGGGCTTTAGACAAGGCAGGATACCCTGACATGAAGGTTATGATTGGAGAAATTGGGTGGCCAACTGATGGTGACAAGAATGCTAATGCTAAGAATGCAAAAAGATTCAACTTGGGTTTGCTTAAACATGCTCTTAGTGGCAAGGGTACCCCTAAAAGGAATGGCACAGTTGACTTGTTTCTATTCAGCCTCATTGATGAGGACGCTAAAAGTGTTGCTCCTGGTAACTTCGAGAGGCATTGGGGTATTTTTGAGTTTGATGGCAAGCCAAAGTATGAATTAGACTTAATTGGTCAACATAAGGAAAAGGGTCTTGTCCCAGTGGAAGATATCAAGTACATGGAAAAGAGGTGGTGTATTTTGAATCCAGATGTTACTAAGTTGGATGATTTGGCTGGTAGCATTGACTATGCTTGTACCTTTTCTGATTGTACTTCCCTTGGTTATGGCTCTACTTGTAATAATCTTAGTGTCCAAGGGAATGCATCTTATGCCTTCAATATGTATTATCAAGTAAACAACCAACAGAATTGGGACTGTGACTTCTCTGGTTTGGCTGTCATAACACATAAGGATCCATCACAAAATGGATGCCAATTCCCTGTAATGATTTCTAGTAGTTCTTCTTTGCTTCTTCATCGAGGGCTTTCAGAAATCCTTAAGAAAGCATTGAGGGTGTATATTTTTGTCATGTTTTTGCTATAG 1452 0.4208 MAPNFLHQVAFLLVLSTVVSSGYAWVGVNWGTMATHQLQPEKVVKMLKENGFRKLKLFDADEFIMTALMGTDIEVMVAIPNNMLDKISNSPKAADSWVNDNVTSYFTGVKIKYVAVGNEPFLKAYNGSFAKKTLPALKNIQTSLNKAGLGSKIKITVPFNADIYYSPDSNPVPSTGDFRPEVRDLTVEIIQFLYANNAPFTVNIYPFLSLYGNQDFPFDFAFFDGNNKPLRDGKALYTNVFDANLDTLLWALDKAGYPDMKVMIGEIGWPTDGDKNANAKNAKRFNLGLLKHALSGKGTPKRNGTVDLFLFSLIDEDAKSVAPGNFERHWGIFEFDGKPKYELDLIGQHKEKGLVPVEDIKYMEKRWCILNPDVTKLDDLAGSIDYACTFSDCTSLGYGSTCNNLSVQGNASYAFNMYYQVNNQQNWDCDFSGLAVITHKDPSQNGCQFPVMISSSSSLLLHRGLSEILKKALRVYIFVMFLL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1790 483 Gene3D Glycosidases 25 352 - -
Gso6g1790 483 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Gso6g1790 483 Gene3D - 361 458 - -
Gso6g1790 483 SMART X8_cls 366 449 IPR012946 -
Gso6g1790 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Gso6g1790 483 Pfam Glycosyl hydrolases family 17 26 344 IPR000490 GO:0004553|GO:0005975
Gso6g1790 483 Pfam X8 domain 367 435 IPR012946 -
Gso6g1790 483 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 6 472 - -
Gso6g1790 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 472 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1790 Gso-Chr6 20894145 20897035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1790 4 453 Miscellaneous Gene Families AT2G19440 57.301 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1790 - - gmx:100800665 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1274 4 32939763 32942453 Gso6g1790 6 20894145 20897035 GST