Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1615 ATGTTGGAGGGTCCAACCTTTCTTGTTTCGAGGGACTTACCGAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAATTCCTTCTGTGTGATGGAGCTCGCGAGCAATAAGCGTCAACTGGAACTAGAGGAAGAAGCTGTGCTGACAAAGTCATGCAAGCTTTCAGATGCTCCAGAGGAAGGAGAAACGAAGATGAACTTCCAAAATCTTTCCCTATCAGTCAACCAAGCAAATGATCAAAACCATTCAAGTGATCAGTCTGACTCAAGTTCACTTATCTTCCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGATGCTCAAGGTCTGACTATGGTTCGATTGCCTCATTGAACCAAAGTTTTCGATCTCTTGTCCGAACTGGAGAGCTTTATAGGCTGAGGCGACAGATGGGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTCCCTGAATGGGAGGCATTCGATCCAAACACCCGTCGATGGATGCGCTTGCCTAGAATGCCCTCTAATGAATGCTTTATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACGGAGCTTCTTGTCTTTGGAAAGGAAATAATGTCTCCTGTCATATACAGATATAGCATTTTGATGAATGCGTGGTCATCTGGTATGATAATGAATGTTCCTAGATGCTTGTTTGGTTCTGCCAGCCTTGGAGAAGTTGCCATATTAGCCGGAGGTTGTGATCCACGTGGCAACATCTTGAGCTCAGCTGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTCCCAAACATGAATAAAGCAAGGAAAATGTGTTCTGGTGTATTTATAGATGGGAAATTTTATGTCATTGGTGGGATTGGAGTAGGTAACTCAAAGCAGCTAACATGTGGTGAGGAGTTTGATCTGCAGACAAGAAAATGGCGAGAAATACCCAACATGTTCCCCAGGCGACATGGAGGAACTGAGGCGACTGAGGTATCGGCTGCTGCCGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATTCTGCTGATTATGCCCAACAAGAGGTAAGGAGATATGATAAAGACAATAATTTGTGGTTCACTATTGGAAGATTACCTGACCGAATAGTTTCAATGAATGGCTGGGGATTAGCTTTTCGCGCATGTGGAAATCGCCTAATTGTTATTGGTGGGCCAAGAGCTTTAGATGGAAGGGTAATTGAAATCAATGCTTGTGTCCCAGGTGAAGGTGTGCCAGAGTGGAACCTGCTTGCTAGCAGGCAATCGGGGAGCTTTGTGTATAACTGTGCAGTGATGGGATGCTGA 1326 0.4457 MLEGPTFLVSRDLPSSCEQETRWIYNSFCVMELASNKRQLELEEEAVLTKSCKLSDAPEEGETKMNFQNLSLSVNQANDQNHSSDQSDSSSLIFQLGRDISINCLLRCSRSDYGSIASLNQSFRSLVRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTRRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNAWSSGMIMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIDGKFYVIGGIGVGNSKQLTCGEEFDLQTRKWREIPNMFPRRHGGTEATEVSAAAEAPPLVAVVNNVLYSADYAQQEVRRYDKDNNLWFTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGVPEWNLLASRQSGSFVYNCAVMGC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1615 441 Gene3D - 134 413 IPR015915 GO:0005515
Gso6g1615 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Gso6g1615 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Gso6g1615 441 SMART kelc_smart 282 331 IPR006652 GO:0005515
Gso6g1615 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Gso6g1615 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 10 441 - -
Gso6g1615 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 10 441 - -
Gso6g1615 441 SUPERFAMILY Kelch motif 150 437 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1615 Gso-Chr6 16991022 16994289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1615 90 315 EF-hand Containing Proteins AT4G39560 28.696 7.81e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1615 - - gmx:100788507 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1615 6 16991022 16994289 Gso6g1615 6 16991022 16994289 ECH
Gso4g1438 4 42390462 42393380 Gso6g1615 6 16991022 16994289 GST