Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1438 ATGTTGGAGGGTCCAACCTTTCTTGTTTCGAGGGACATACTGAGCTCTTGTGAGCAAGAGACCAGGTGGATCTACAATTCCTTCTGTGTGATGGAGCTCGCGAGCAATAAGCGTCGACTGGAACTAGAGGAAGAAGCCGTGTTGACAAAGTCATGCAAGCTTTCAGATGCTCCAGAGAAAGGGGAAACAAAGAAGAGCATCCAAGATCTTTCCCTATCAGTCAACCAAGCAAATGCTCAAAACCATTCAAGTGATCAGTCTGACTCAAGTTCACTTATCTTCCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGATGCTCAAGGTCTGACTATGGTTCGGTTGCCTCATTGAACCAAAGTTTTCGATCTCTCATCCGAACTGGAGAGCTTTATAGGCTGAGGCGACAGATGAGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTCCCTGAATGGGAGGCATTTGATCCAAACACCCGTCGATGGATGCGCTTGCCTAGAATGCCCTCTAATGAATGCTTTATATGTTCAGATAAGGAGTCCTTGGCTGTTGGTACGGAGCTTCTTGTCTTTGGAAAGGAAATAATGTCTCCTGTCATATACAGATATAGCATTTTAATGAATGCATGGTCATCTGGTATGGAAATGAACATTCCTAGATGCTTGTTCGGTTCTGCCAGCCTTGGAGAAATTGCCATATTAGCTGGTGGTTGTGATCCTCGTGGAAACATCTTGAGCTCAGCTGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTCCCAAACATGAATAAAGCAAGGAAAATGTGTTCTGGTGTATTTATAGATGGGAAATTTTATGTCATTGGCGGGATTGGAGTAGGTAATTCAAAGCAGCTAACATGTGGTGAGGAGTTTGATCTGCAGACAAGAAAATGGCAAAAAATACCTAACATGTTCCCTGGGCGAAATGGAGGAACTGAGGCGACTGAGGTATCGTCTGCTGCTGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATTCTGCAGATTATGCCCAACAAGAGGTAAGGAGATATGATAAAGACAATAATTTGTGGGTCACTATTGGAAGATTACCTGACCGAATAGTCTCAATGAATGGCTGGGGGTTAGCCTTTCGTGCATGTGGAAATCGCCTAATTGTTATTGGTGGGCCAAGAGCTTTAGATGGAAGGGTAATTGAGATCAATGCTTGTGTCCCAGGTGAAGGTGTGCCAGAGTGGAACCTGCTTGCTAGCAGGCAATCAGGGAGCTTTGTGTATAACTGTGCAGTGATGGGATGCTGA 1326 0.4427 MLEGPTFLVSRDILSSCEQETRWIYNSFCVMELASNKRRLELEEEAVLTKSCKLSDAPEKGETKKSIQDLSLSVNQANAQNHSSDQSDSSSLIFQLGRDISINCLLRCSRSDYGSVASLNQSFRSLIRTGELYRLRRQMSIIEHWVYFSCNLPEWEAFDPNTRRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNAWSSGMEMNIPRCLFGSASLGEIAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIDGKFYVIGGIGVGNSKQLTCGEEFDLQTRKWQKIPNMFPGRNGGTEATEVSSAAEAPPLVAVVNNVLYSADYAQQEVRRYDKDNNLWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGVPEWNLLASRQSGSFVYNCAVMGC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1438 441 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 441 - -
Gso4g1438 441 Gene3D - 132 413 IPR015915 GO:0005515
Gso4g1438 441 SUPERFAMILY Kelch motif 150 437 IPR015915 GO:0005515
Gso4g1438 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Gso4g1438 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Gso4g1438 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 441 - -
Gso4g1438 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1438 Gso-Chr4 42390462 42393380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1438 90 315 EF-hand Containing Proteins AT4G39560 26.957 2.20e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1438 - - gmx:100813260 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1438 4 42390462 42393380 Gso6g1615 6 16991022 16994289 GST