Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1599 ATGGTTTTTTTGGTGATTGGTGTGATGAATTGTGTGGCTAGCAGTTTGTTTGCAGGAGGATGGGCTAATAAAGAAGATAACATAAAATGGCTGAAACAGCAAACTCAATCCCACAACACTGGCCAGAAAAAGTTAGCCGGCAAAGTTGCTATAATCACCGGCGGAGCCAGCGGCATCGGCGAAGAGACGGCGTGCTTGTTTGCTCAACATGGTGCAGGAATGGTTGTGATTGCAGACATCCAAGATGACTTGGGTAACCTAGTAGCAGCATCCATTGCCTCTCACAGGTGCAGCTATGTCCGCTGTGACGTGACAGAGGAAGTGCAAGTCAAAAACCTCGTGGACTCCACAGTCAACGCTCACGGCCAGTTAGACATCATGTTCAGCAACGCGGGCATACTCAGTTCCTCTGACCAGACAATCCTCGACCTCAATCTCTCCGAGTACGACCGTCTCCTCGCCGTCAATGCGCGGGGCATGGCGGCGTGCGTGAAGCATGCGGCGCGGGCGATAGTGGAGCGGCGCGTGAGGGGCAGCATCGTGTGCACGGCGAGCGTCTCGGCGTCGCACGGCGGCCTGTGGCGCACCGACTACGTGATGTCAAAACACGCGGTGAAGGGGCTCGTGCGCGCCGCGAGCGCGCAGCTTGGGGTGCATGGTGTTAGGGTGAACTGCGTCTCGCCGAGTGGGTTGGCCACGCCGTTGACACGTGGCGCGCATGCGGCGATGGAGACGCATGAGTTGCAGAAGCAGTACGCGCAGAGCTCTTGGTTGAAAGGTATCGTTTTGACGCCGAAGCATATTGCGGATGCGGTGCTGTTTCTTGCGTGCGGTGATTTGGAGTTTGTAACCGGACACGATCTTGTGGTGGACGGTTGTTTTCACGGTGCTTAG 894 0.5615 MVFLVIGVMNCVASSLFAGGWANKEDNIKWLKQQTQSHNTGQKKLAGKVAIITGGASGIGEETACLFAQHGAGMVVIADIQDDLGNLVAASIASHRCSYVRCDVTEEVQVKNLVDSTVNAHGQLDIMFSNAGILSSSDQTILDLNLSEYDRLLAVNARGMAACVKHAARAIVERRVRGSIVCTASVSASHGGLWRTDYVMSKHAVKGLVRAASAQLGVHGVRVNCVSPSGLATPLTRGAHAAMETHELQKQYAQSSWLKGIVLTPKHIADAVLFLACGDLEFVTGHDLVVDGCFHGA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1599 297 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 42 295 - -
Gso6g1599 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 IPR002347 -
Gso6g1599 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Gso6g1599 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Gso6g1599 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 292 IPR036291 -
Gso6g1599 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Gso6g1599 297 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 42 295 - -
Gso6g1599 297 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 48 229 - -
Gso6g1599 297 Pfam Enoyl-(Acyl carrier protein) reductase 54 295 - -
Gso6g1599 297 Gene3D - 34 295 - -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Gso6g1599 297 PRINTS Glucose/ribitol dehydrogenase family signature 258 278 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1599 Gso-Chr6 16725944 16730930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1599 44 291 Acyl Lipid Metabolism Gene Families AT1G63380 26.437 3.09e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1599 - - gsj:114415874 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1458 4 43013676 43017071 Gso6g1599 6 16725944 16730930 GST