Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1458 ATGGCTGAATCAGCAAACTCAATCCACAACAGTGGCCAGAAAAAGTTAGCCGGCAAAGTTGCCATAATCACCGGCGGAGCCAGCGGCATCGGCGAAGAGACGGCGCGTCTGTTTGCTCACCATGGTGCACGAATGGTTGTGATTGCAGACATCCAAGATGACCTGGGTATCCAAGTAGCAGCATCCATTGGCTCTCACAGGTGCAGCTATGTCCGTTGTGACGTGACAGACGAAGACCAAGTCAAAAACCTCGTGGATTCCACGGTCAACGCTCACGGCCAGCTGGACATCATGTTCAGCAACGCGGGCATCCTCAGTCCCTCCGACCAGACAATCCTCGACCTCGACTTCTCCGCGTACGACCGTCTCCTCGCCGTGAACGCGCGGGGCATGGCAGCGTGCGTGAAGCACGCAGCGCGGTCGATGGTGGAGCGGCGCGTGAGGGGCAGCATTGTGTGCACGGCGAGCGTGTCAGCGTCGCACGGCGGCCTGCGGCGAACCGACTACGTGATGTCGAAGCACGCGGTGAAGGGGCTCATGCACGCGGCCAGCGCGCAGCTTGGAGCGCATGGTGTTAGGGTGAACTGCGTCTCGCCGAGTGGGTTGACCACGCCGCTGACACGTGCCGCGCATGCCGCGATGGAGACGAAGGAGTTGCAGAAGCAGTACGCGCAGAGCTCTAGGTTGAAAGGTGTCTTTTTGACGCCGAAGCATGTCGCGGATGCGGTGCTGTTTCTTGCGTGCGGTGACTCCGAGTTTGTAACCGGACACGATCTTGTGGTGGACGGTTGTTTTGACGGTGTTTAG 807 0.5948 MAESANSIHNSGQKKLAGKVAIITGGASGIGEETARLFAHHGARMVVIADIQDDLGIQVAASIGSHRCSYVRCDVTDEDQVKNLVDSTVNAHGQLDIMFSNAGILSPSDQTILDLDFSAYDRLLAVNARGMAACVKHAARSMVERRVRGSIVCTASVSASHGGLRRTDYVMSKHAVKGLMHAASAQLGAHGVRVNCVSPSGLTTPLTRAAHAAMETKELQKQYAQSSRLKGVFLTPKHVADAVLFLACGDSEFVTGHDLVVDGCFDGV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1458 268 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 200 - -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Gso4g1458 268 PRINTS Glucose/ribitol dehydrogenase family signature 229 249 IPR002347 -
Gso4g1458 268 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 13 265 - -
Gso4g1458 268 Gene3D - 5 266 - -
Gso4g1458 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
Gso4g1458 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Gso4g1458 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Gso4g1458 268 Pfam Enoyl-(Acyl carrier protein) reductase 25 263 - -
Gso4g1458 268 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 13 265 - -
Gso4g1458 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 263 IPR036291 -
Gso4g1458 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1458 Gso-Chr4 43013676 43017071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1458 15 262 Acyl Lipid Metabolism Gene Families AT1G63380 26.437 2.21e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1458 - - gmx:100817513 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1458 4 43013676 43017071 Gso6g1599 6 16725944 16730930 GST