Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1500 ATGTTGAGGCTTTACGTGTGTGTATTGGAAACCAAGGACCTACCCGTGAAGGATACCTACGTGACGCTAAGGCTCGGAAAGTTGAAGTGCAAGACAAGGATACTGAGGAACACGTGGAACCCCGTTTGGAACGAGGAGTTTGGTTTCAAGGTGCATGGTGCTGAAGACGTGCTTGTTGTCTCTGTTGTTGTTAATCATGATAATAATAATAAGTGCAGATCAGTGACCAATGGTTCTGTAGTGGAGTTTGTGGGTGAGGTACGGATTCCGGTTGGTTCGGTTGCTTTTGAGGATAAGCAAACGTTGCTGCCCACGTGGTTCTCTCTTGAAAGCCCCAAGAGTGGGAGGTTTTTCAATAAATATTGTGGGAAAATTCTCCTTACTGTGTCTCTTCATGGTAAAGGCCGCTCTTTTATGAATCATAAGCATTCTCCAAATTCAACTATTGCAGTTGAGAACTCAAGAGACTTGGAAGGTCTGCACTTTTTATGTCAGTCACATTGTGATAAAATGGGTGTAGGCAAACAATTGTTGAAGGATATTGCTAATGGTCTGCATAGGATTTTCAAAAAGAAAGAGGGAAACTCAAATTTTGGGGATTCTTCAGAACTATCCTCTTCATTATCTGATTATGAAGATAGTGTACACGAAAATACGTTTCCTTGTAGCTTTGAAGAATCCATTGCACTGATGGAATCAAGAGATGACAACAAACCAGAAATGCCTGAAAATTTGCCCGGAACAACAAATGTGCAAGAGGGGCCTTGGACATGGAAAAATGGAGACACATCATGTTTAACACGAGTTGTTACCTATATGAAAGCGGCTACAAAATTGATTAAGGCAGTTAATGCCATTGAGGAGCAAACCTACATTAGAGTGAGTAGAAAGGAATTTGCTATACTGGTTAGTGTAAGCACACCTGAGGTCCCATATGGGAATTCCTTTAGGATTGAATTACTTTACAAGATAATGCCAGGGGAGGTATCTTCTGGAGAGGAATCCTCCCATCTAGTTGTGTCTTGGGGAATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAGGTGGGGCAAGACAAGGATTGAAGGAGAGTTTTAGCCAGTTCTCGGACCAACTTGCACGGAATTTTAAGGTGCTAGATAAGGCAGATTTACCAGACAAGGAACATTTGTTGGCAACTTTGCAAACAGAAGACCAGTGGTATTGGTGGCAGACAATTACATACTTTTGGAATTTCACTGTGGCTTCCACCATTTTCATGTTTTTATATGTGTTGGTGCATATTTTAAGGTGTGGTCCAAATCTGCTTCAGGGCTTGGAATTTAGTGGGCTTGAATTGCCAGATAGTTTTGGAGAGCTCATTACAAGTGGAATTTTAATCATCCAGTTGCAGCGTGTTTATAATATGGTGTCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGCGATGGATGGGTTCTTACTGTGGCTTTAATTGAGGGGGTTGACCTAGCCTCCTTGGAGTCAGAGGGATTGTCAGATCCCTATGTAGTTTTCACTTGTAATGGACAAACAAGGTCAAGCTCTGTGAAGCTTCAAACTTCTGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTCTACATGTGGAAGTTTTTGATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTTCTAAGACACACATCAACTGAGTTGGCAGACATGTGGGTCATGCTAGAAGGAAAGCTTGCCCAATCTTCTCAGTCAAAGTTGCACTTGAGAATTTTCTTGGATAACAATAATGGAGTTGAAACAATTAAGGAATATTTGGAGAAGATGGAAAAGGAAGTCGGCAAAAAATTGAATCTTAGATCACCTCAAAGGAATTCTACATTCCAGAAATTGTTTGCCTTGCCTCCGGAAGAATTTCTCATCAAAGATTTCACTTGTTACCTCAAGAGAAAAATGCCTTTGCAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTGGGGTTTCATGCCAATTTGTTCGGACACAAAACCAAGTTTTTCTTCCTTTGGGAAGATATTGAAGAGATACAAGTGCTTCCTCCATCATTGGCAACATTAGGGAGCCCTACATTGGTCATAGTTCTGCGAAGAGGCCGAGGTCTCGACGCAAGGCATGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGATTTCATTTTCAATCTTTTGTTTCATTTAGTGCTGCCTCCAGAGCAATAAAGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCAGAAAGAACAAATTTCAGAAGAGCATGAAGATCAAGAAAGATTTGTAATCCCGGAAGACTCTGCATCTATCTTAGAGGATGAAGAAAAAATGTCCAGAATTTTCTCTGCAGAACTGCCAATCAAGATGAAATCAGTGATGGGAATTTTTGATGGAGGAAACCTGGAGCATAAAATTATGCAGAGAACAGGATGTACGAACTATGAAACAACATCATGGGAACAAGTAAAGCATGATGTCTTCGAGAGGCGTGTTTCTTACCAATTCAATCGACACGTGTCAGCTTTTGGTGGTGAAGTCACTTGCACACAACAAAAGTTTCCAAATGCAAACACTGGAGGTTGGACTGTGATTGAAGTTATGGATCTTCACGGTGTCCCATTTGCTGATCACTTCCATATTCATTTTAGGTATGAAATAGAGAAATCCTCTCTTGGTGACTGTGCTTGCAAGTGTGATGCTTACATTGGTATTATGTGGCTTAAGAGCTCGAAGTTTCAGCAGAGGATCAACAGGAACATAACTGCCAAGTTTAACCTTCGATTGAAGGAAATATTTGAACTGGTTCAGAAAGAGATTTTATTAATGTCTCAGAACTCTCATGGATAA 2949 0.41 MLRLYVCVLETKDLPVKDTYVTLRLGKLKCKTRILRNTWNPVWNEEFGFKVHGAEDVLVVSVVVNHDNNNKCRSVTNGSVVEFVGEVRIPVGSVAFEDKQTLLPTWFSLESPKSGRFFNKYCGKILLTVSLHGKGRSFMNHKHSPNSTIAVENSRDLEGLHFLCQSHCDKMGVGKQLLKDIANGLHRIFKKKEGNSNFGDSSELSSSLSDYEDSVHENTFPCSFEESIALMESRDDNKPEMPENLPGTTNVQEGPWTWKNGDTSCLTRVVTYMKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNSFRIELLYKIMPGEVSSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESFSQFSDQLARNFKVLDKADLPDKEHLLATLQTEDQWYWWQTITYFWNFTVASTIFMFLYVLVHILRCGPNLLQGLEFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKAHGDGWVLTVALIEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLHVEVFDFDGPFDQDVSLGHAEINFLRHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNNNGVETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIVLRRGRGLDARHGAKTQDEEGRLRFHFQSFVSFSAASRAIKALWRTRILNPYQKEQISEEHEDQERFVIPEDSASILEDEEKMSRIFSAELPIKMKSVMGIFDGGNLEHKIMQRTGCTNYETTSWEQVKHDVFERRVSYQFNRHVSAFGGEVTCTQQKFPNANTGGWTVIEVMDLHGVPFADHFHIHFRYEIEKSSLGDCACKCDAYIGIMWLKSSKFQQRINRNITAKFNLRLKEIFELVQKEILLMSQNSHG* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1500 982 ProSiteProfiles VASt domain profile. 810 973 IPR031968 -
Gso6g1500 982 Gene3D C2 domain 480 616 IPR035892 -
Gso6g1500 982 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 140 IPR035892 -
Gso6g1500 982 SMART C2_3c 3 103 IPR000008 -
Gso6g1500 982 SMART C2_3c 497 596 IPR000008 -
Gso6g1500 982 Pfam VAD1 Analog of StAR-related lipid transfer domain 216 363 IPR031968 -
Gso6g1500 982 Pfam VAD1 Analog of StAR-related lipid transfer domain 814 954 IPR031968 -
Gso6g1500 982 ProSiteProfiles C2 domain profile. 477 596 IPR000008 -
Gso6g1500 982 MobiDBLite consensus disorder prediction 236 256 - -
Gso6g1500 982 ProSiteProfiles VASt domain profile. 211 383 IPR031968 -
Gso6g1500 982 Gene3D C2 domain 2 133 IPR035892 -
Gso6g1500 982 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 247 979 - -
Gso6g1500 982 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 247 - -
Gso6g1500 982 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 496 621 IPR035892 -
Gso6g1500 982 Pfam C2 domain 3 109 IPR000008 -
Gso6g1500 982 Pfam C2 domain 497 596 IPR000008 -
Gso6g1500 982 SMART gram2001c 649 715 IPR004182 -
Gso6g1500 982 CDD C2 4 109 - -
Gso6g1500 982 Gene3D - 647 774 IPR011993 -
Gso6g1500 982 CDD C2 498 598 - -
Gso6g1500 982 PANTHER BNAA05G37250D PROTEIN 2 247 IPR044511 -
Gso6g1500 982 PANTHER BNAA05G37250D PROTEIN 247 979 IPR044511 -
Gso6g1500 982 Pfam GRAM domain 651 731 IPR004182 -
Gso6g1500 982 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1500 Gso-Chr6 15120344 15125445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1500 1 144 Lipid Metabolism Gene Families AT1G22610 31.373 1.13e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1500 - - gmx:100817914 1945.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1500 6 15120344 15125445 Gso6g1500 6 15120344 15125445 ECH
Gso4g1581 4 45417455 45422486 Gso6g1500 6 15120344 15125445 GST