Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1483 ATGGGTGGATCAATTTCAAAACGGAGGCGTTCTAGGCAACGTTCGGCCTCAAATTTTCTTCCTCGGTATCAACAACCTCATTTCCCACAAAGCCAAGATAATGGGTCTGTGGGGCATTATGGGTATTCATCTCAGAGCTATAGTGGTGGTCGTGCTCCAGAACAAGTAAAGAGCTTGGATAGGAAGTATTTAAGGATAGGTGATGATTATAAGAGCTTGAAGCAGGTAACTGATGCTCTGGCAAAAGCTGGCCTAGAGTCTTCAAATCTCATTGTTGGGTTTGATTTTACGAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGGTGCCTGCATCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACACATGACCAGGAAGTTTTTTGTTTCTATCCTGATGAGAGATTTTGTCATGGATTTGAAGAAGTGTTGGAACGGTACAGGGAATTGGTCCCTCAATTAAAACTGGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTGTTAGTGATTATAGCAGATGGGCAGGTGACGAGAAGTGTTGACACTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAGTATCCCTTATCAATCGTATTAGTTGGAGTTGGAGATGGACCATGGGATATGATGAAAAAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCAGTCCAGAAAGGAAACGGAGTTTGCACTTTCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGAGCTTAATATATTGGGTGCCCGTAGAGGGAAAGATATAGACCGGACTCCTCTACCACCGCCTCTATATGGTGCTGCATCTTTCAATTCCCCCAAAACTTCCCGTCAAAACAGTTTTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGCACGAACCCTCCTGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACGGATCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1287 0.4305 MGGSISKRRRSRQRSASNFLPRYQQPHFPQSQDNGSVGHYGYSSQSYSGGRAPEQVKSLDRKYLRIGDDYKSLKQVTDALAKAGLESSNLIVGFDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFCFYPDERFCHGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIVLVGVGDGPWDMMKKFDDNIPARAFDNFQFVNFTEIMSKNMDQSRKETEFALSALMEIPSQYKATLELNILGARRGKDIDRTPLPPPLYGAASFNSPKTSRQNSFRPSAPSSRHDVSTNPPATSASDNQVCPICLTDPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1483 428 MobiDBLite consensus disorder prediction 331 380 - -
Gso6g1483 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 423 - -
Gso6g1483 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 428 IPR013083 -
Gso6g1483 428 PANTHER RING-FINGER PROTEIN 1 428 - -
Gso6g1483 428 MobiDBLite consensus disorder prediction 16 52 - -
Gso6g1483 428 SMART VWA_4 87 290 IPR002035 -
Gso6g1483 428 CDD RING-HC_RGLG_plant 384 428 IPR045317 GO:0061630|GO:0070534
Gso6g1483 428 MobiDBLite consensus disorder prediction 347 380 - -
Gso6g1483 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Gso6g1483 428 SUPERFAMILY RING/U-box 379 424 - -
Gso6g1483 428 SUPERFAMILY vWA-like 89 271 IPR036465 -
Gso6g1483 428 Pfam Copine 112 325 IPR010734 -
Gso6g1483 428 MobiDBLite consensus disorder prediction 1 53 - -
Gso6g1483 428 PANTHER COPINE FAMILY PROTEIN 1 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1483 Gso-Chr6 14928044 14931961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1483 K16280 - gmx:100790800 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1483 6 14928044 14931961 Gso6g1483 6 14928044 14931961 ECH
Gso4g1599 4 45646450 45650505 Gso6g1483 6 14928044 14931961 GST