Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1599 ATGGGTGGATCAATTTCAAAACGGAGGCGTTCTAAGCAACGGTCGTCAAATTTTTTTCCTCGGTATCAGCAACCTCATTTCCCACAAAGCCAAGATAATGGGTCTGTGGGGCATTATGGGTATTCACCTCAGAGCTATGGTGGTCGTCGTGCTCCAGAACAAGGAAAGAGCTTGGATAGGAAGTATTCAAGGATAGGTGATGATTATAAGAGCTTGGACCAGGTAACTGATGCTCTGGCAAAAGCTGGCTTAGAGTCTTCAAATCTGATTGTTGGGATTGATTTTACGAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCTATCCGGATGAGAGATTTTGTCGTGGATTTGAAGAAGTGTTGGAACGGTACAGGGAGTTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTGTTAGTGATTATAGCTGATGGGCAGGTGACGAGAAGTGTTGACACTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAACAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTCGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAACGGAGTTTGCACTCGCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGAGCTTAATATATTGGGTGCTTGTAGAGGGAAAGATATAGACCGGATTCCTCTCCCACCGCCTCTATATGGTGCAGCATCTTTCAATTCCCCCAAAACTTCCCGTCAATATAGTTCTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGCACAAACCCTCCTGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCGATCCTAAGGATATGGCCTTCGGTTGCGGGCATCAGACATGCTGTGATTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1284 0.4361 MGGSISKRRRSKQRSSNFFPRYQQPHFPQSQDNGSVGHYGYSPQSYGGRRAPEQGKSLDRKYSRIGDDYKSLDQVTDALAKAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCRGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNILGACRGKDIDRIPLPPPLYGAASFNSPKTSRQYSSRPSAPSSRHDVSTNPPATSASDNQVCPICLTDPKDMAFGCGHQTCCDCGQDLELCPICRSTIDTRIKLY* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1599 427 SUPERFAMILY vWA-like 87 270 IPR036465 -
Gso4g1599 427 MobiDBLite consensus disorder prediction 1 57 - -
Gso4g1599 427 SUPERFAMILY RING/U-box 378 423 - -
Gso4g1599 427 SMART VWA_4 86 289 IPR002035 -
Gso4g1599 427 Gene3D von Willebrand factor, type A domain 84 303 IPR036465 -
Gso4g1599 427 CDD vWA_copine_like 65 315 IPR010734 -
Gso4g1599 427 MobiDBLite consensus disorder prediction 346 379 - -
Gso4g1599 427 Pfam Copine 111 324 IPR010734 -
Gso4g1599 427 MobiDBLite consensus disorder prediction 16 40 - -
Gso4g1599 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 427 IPR013083 -
Gso4g1599 427 PANTHER RING-FINGER PROTEIN 1 427 - -
Gso4g1599 427 Pfam Zinc finger, C3HC4 type (RING finger) 381 422 - -
Gso4g1599 427 ProSiteProfiles Zinc finger RING-type profile. 384 417 IPR001841 -
Gso4g1599 427 CDD RING-HC_RGLG_plant 383 427 IPR045317 GO:0061630|GO:0070534
Gso4g1599 427 PANTHER COPINE FAMILY PROTEIN 1 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1599 Gso-Chr4 45646450 45650505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1599 K16280 - gmx:100809850 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1599 4 45646450 45650505 Gso6g1483 6 14928044 14931961 GST