Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1470 ATGGCGGAGAAGTCGGGAGCAGCAGAAGAGAGCTCTAATCCGATGGCTTTTCACCATACGACGACGAAGCTTGTCGTTTTGGCAGACCTTAACGTCGAAGCCGAAGCCGAAGCCGAAGAAGACGATTCTTCTCTCGTCCCTCCTCCACTAATTACCATTCAAGATAAAAGTTCGTTGTCCAAAGACACTGATAGCATTGAAGCTGAAAGTAAAAAGTTGAACAAACTGAGCAAATCCCGCTCAAGAAAGACAGATTCTTCTCTTGATTTTGTAGCTGATGTGGATGGTGATCAACATGTTCAAGGGCCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCACGCTCATTTTATACTCGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGTTAGCATATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCTGAAAATAGTTCAGATAAAGAACTTGAACCTGATGAACTTGAAGAGATTCTTTCTAAGCTGAAAGAGTCAGTAAAGTCAGATATCAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAGAGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTAAAATTGGGAATTTGGAATTATCTGCAAAGTGTTTTCAAGAATTGATTTTAAAAGATCAAAACCATCCTGCAGCCTTGGTCAATTATGCTGCTCTTCTTTTGTGTAAATATGCTTCGGTTGTAGCAGGTCCTGGTGCAAGTGCTGCTGAAGGTGCCATGACTGATCAGATCATGTCTGCTAATGTTGCTAAGGAATGTTTGTTGGCTGCAGTTAAAGCAGATAGCAAATCAGCCCATGTCTGGGCAAATCTTGCCTGTGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCCAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTTTCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCGTGTGCTGGAAATGAGATGGCTTCTATAATAAGAGACGGTGATTCATCCCTGGTTGAGATTCCAATAGCTTGGTCTGGGCTTGCCATGGTTCATAAGGCTCAGCATGAGATAGCGGCAGCATATGAAAGTGAACAGAATGGGCTAAGAGAAGTTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCTATAGCAGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTCGGTATTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACCTTAAAGCTGCTGTTGCCTGTGACAAGGATTGCAGCTATGCATGGGCTACCCTTGGTGTCTCACTTCAACTATCAGAAGAACCATCACAAGCTGAAGAAGTATACAAGCAAGCATTGTCGTTGGCAACAACTAAACAAGCGCATGTTATATTATCCAACTTGGGAATTCTCTATCGGCATCAGAAACAATATCAACGTGCGAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCTGGGTATGCTCCAGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTTGGAGGAGGCCAAGTATTGTTTTGACAAAGCCCTCCAATCAGATCCATTGTTGGATGCAGCTAAGTCTAATTTGATTAAGGTTGTTGCCATGTCTAAGTTATGCAAAGGCCTCTCCTCATGCGGTCTTAAAGAATGA 1911 0.4328 MAEKSGAAEESSNPMAFHHTTTKLVVLADLNVEAEAEAEEDDSSLVPPPLITIQDKSSLSKDTDSIEAESKKLNKLSKSRSRKTDSSLDFVADVDGDQHVQGPPSSREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPDELEEILSKLKESVKSDIRQTAVWNTLGFILLKTGRVKSAVSVLSSLLSIAPENYDCLGNLGIAYLKIGNLELSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGPGASAAEGAMTDQIMSANVAKECLLAAVKADSKSAHVWANLACAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAFHRIKEAERSQDPSELLSCAGNEMASIIRDGDSSLVEIPIAWSGLAMVHKAQHEIAAAYESEQNGLREVEERAVCSLKQAIAEDPNDAVQWHQLGIHSLCARQFKTSQKYLKAAVACDKDCSYAWATLGVSLQLSEEPSQAEEVYKQALSLATTKQAHVILSNLGILYRHQKQYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFDKALQSDPLLDAAKSNLIKVVAMSKLCKGLSSCGLKE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1470 636 SUPERFAMILY TPR-like 126 607 IPR011990 GO:0005515
Gso6g1470 636 Gene3D Tetratricopeptide repeat domain 539 622 IPR011990 GO:0005515
Gso6g1470 636 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 6 633 - -
Gso6g1470 636 SMART tpr_5 423 456 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 542 575 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 254 287 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 472 505 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 343 376 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 220 253 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 129 162 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 506 539 IPR019734 GO:0005515
Gso6g1470 636 SMART tpr_5 576 609 IPR019734 GO:0005515
Gso6g1470 636 Gene3D Tetratricopeptide repeat domain 321 411 IPR011990 GO:0005515
Gso6g1470 636 SUPERFAMILY TPR-like 335 535 IPR011990 GO:0005515
Gso6g1470 636 Pfam Tetratricopeptide repeat 230 289 - -
Gso6g1470 636 Gene3D Tetratricopeptide repeat domain 454 538 IPR011990 GO:0005515
Gso6g1470 636 Pfam Tetratricopeptide repeat 343 376 IPR019734 GO:0005515
Gso6g1470 636 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Gso6g1470 636 MobiDBLite consensus disorder prediction 60 92 - -
Gso6g1470 636 Pfam Tetratricopeptide repeat 543 604 - -
Gso6g1470 636 MobiDBLite consensus disorder prediction 35 114 - -
Gso6g1470 636 ProSiteProfiles TPR repeat profile. 576 609 IPR019734 GO:0005515
Gso6g1470 636 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Gso6g1470 636 Gene3D Tetratricopeptide repeat domain 115 305 IPR011990 GO:0005515
Gso6g1470 636 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 6 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1470 Gso-Chr6 14782069 14787590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1470 457 608 Glycosyltransferase AT3G04240 25.490 7.25e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1470 - - gmx:100786537 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1470 6 14782069 14787590 Gso6g1470 6 14782069 14787590 ECH
Gso4g1615 4 45839687 45845596 Gso6g1470 6 14782069 14787590 GST