Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1615 ATGGCGGAGAAGTTGGGAGCAGCAGAAGAGAGCTCTAATTCAAAGGCTTTTCACCATACGGCGACGAAGCTCGTCGTTTTGGCAGACCTCAACGTCGATCCTCCCGAAGCCGAAGCCGAAGAAGTGGATTCTTCTCTTGTCCCTCCTCCACCAATTACCATTTTGGCAAATGATGAAAACAGTCAAGATAAAAGTTCGTTGTCTAAAGACACTGATAGCATTGAAGGTGAAAGTAAAAAGTTGAACAAACTGAGCAAATCCCGCTCCAGAAAGACAGATTCTTCTCTTGATTGTGTAGCTGATGTGGATGGCGATCAACATGTTCAAGGGCCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCAAAAAATGCTCACGCTCATTTTATACTCGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGTTAGCTTACGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATAAAGAACTTGAACCTCATGAACTTGAAGAGATTCTTTCTAAGCTGAAAGAGTCAGTGAGGTCAGATATCAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTATGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGTCCATTGCACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATTATTGTTACCATCTTGCCTTGCAGTGGGAATTTGGAATTATCTGCAAAATGTTTTCAAGAATTGATTTTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCTCTTCTTTTGTGTAAATATGCTTCGGTTGTAGCAGGTCCTGGTGCAATTGCTGCTGAAGGTGCCATGACTGATCAGATCATGGCTGCTAATGTTGCTAAGGAATGTTTGTTGGCTGCAGTTAAAGCAGATAGCAAATCGGCCCATGTCTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAATGCTTGGAGAAGGCAGCCAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTACTGAACTGCTTTCTTGTGCTGGAAATGAGATGTCTTCTATAATAAGAGACAGTGATTCATCCCTGGTTGAGATTCCAATAGTATGGTCCGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGCGGCAGCATATGAAAGTGAACAGAATGGGCTAAGAGAAGTTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCTATAGCAGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTTGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACCTTAAAGCTGCTGTTGCCTGTGACAAGGATTGCAGCTATGCATGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAAGAACCATCACAAGCTGAAGAAGTATACAAGCAAGCATTGTCTTTGGCAACAACTCAACAAGCGCATGCTATATTATCCAACTTGGGAATTCTCTATCGGCATCAGAAACAATATCAGCGTGCGAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCTGGGTATGCTCTTGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTTGGAAGAGGCCAAGTATTGTTTTGACAAAGCCCTCCAATCAGATTCATTGTTGGATGCAGCTAAGTCTAATTTGATTAAGGTGGTTGCCATGTCAAAGTTATGCAAAGGCCTCTCCTCATGCGGTCTTAAAGAATGA 1959 0.4313 MAEKLGAAEESSNSKAFHHTATKLVVLADLNVDPPEAEAEEVDSSLVPPPPITILANDENSQDKSSLSKDTDSIEGESKKLNKLSKSRSRKTDSSLDCVADVDGDQHVQGPPSSREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILSKLKESVRSDIRQTAVWNTLGFILLKTGRMQSAISVLSSLLSIAPENYDCLGNLGIAYLQIIVTILPCSGNLELSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGPGAIAAEGAMTDQIMAANVAKECLLAAVKADSKSAHVWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPTELLSCAGNEMSSIIRDSDSSLVEIPIVWSGLAMVHKAQHEIAAAYESEQNGLREVEERAVCSLKQAIAEDPNDAVQWHQLGVHSLCARQFKTSQKYLKAAVACDKDCSYAWSNLGVSLQLSEEPSQAEEVYKQALSLATTQQAHAILSNLGILYRHQKQYQRAKAMFTKSLELQPGYALAFNNLGLVFVAEGLLEEAKYCFDKALQSDSLLDAAKSNLIKVVAMSKLCKGLSSCGLKE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1615 652 MobiDBLite consensus disorder prediction 35 122 - -
Gso4g1615 652 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 8 649 - -
Gso4g1615 652 Gene3D Tetratricopeptide repeat domain 557 642 IPR011990 GO:0005515
Gso4g1615 652 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Gso4g1615 652 SUPERFAMILY TPR-like 471 622 IPR011990 GO:0005515
Gso4g1615 652 Pfam Tetratricopeptide repeat 524 588 - -
Gso4g1615 652 SUPERFAMILY TPR-like 134 395 IPR011990 GO:0005515
Gso4g1615 652 Pfam Tetratricopeptide repeat 230 261 IPR019734 GO:0005515
Gso4g1615 652 Pfam Tetratricopeptide repeat 359 392 IPR019734 GO:0005515
Gso4g1615 652 Gene3D Tetratricopeptide repeat domain 125 319 IPR011990 GO:0005515
Gso4g1615 652 Gene3D Tetratricopeptide repeat domain 330 461 IPR011990 GO:0005515
Gso4g1615 652 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515
Gso4g1615 652 ProSiteProfiles TPR repeat profile. 359 392 IPR019734 GO:0005515
Gso4g1615 652 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 8 649 - -
Gso4g1615 652 MobiDBLite consensus disorder prediction 63 100 - -
Gso4g1615 652 Gene3D Tetratricopeptide repeat domain 470 556 IPR011990 GO:0005515
Gso4g1615 652 SMART tpr_5 558 591 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 592 625 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 522 555 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 359 392 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 262 303 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 439 472 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 488 521 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 137 170 IPR019734 GO:0005515
Gso4g1615 652 SMART tpr_5 228 261 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1615 Gso-Chr4 45839687 45845596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1615 473 624 Glycosyltransferase AT3G04240 25.490 5.07e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1615 - - gmx:100820184 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1615 4 45839687 45845596 Gso6g1470 6 14782069 14787590 GST