LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g1391	ATGGAGAACACTGGTTTGTGTGTACTATGCTTTATACTACTCCTGTTGGGGTGTGTCATTTCCTCAGAATGTAAGTATATAAGATACAACACAACATCAACCATTGTTCCTGGGAAACTCAACGTTCACTTGGTCCCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGGGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTAACCGCATTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAACAGGCATTTTTCCAGCGATGGTGGAGGGAGCAAAGTGATGATATCCAGAATATAGTCAAGGAGCTGGTCAACTCTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTACTCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTATTAAAGAAGAATTTGGAGTGACTCCGAGAATAGGGTGGCAGATTGACCCATTTGGACATTCTGCAGTGCAGGCCTACTTGTTGGGGGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCCAAGAGAAAAGATGAAAAAACTCTTGAAGTTGTGTGGCGGGGCTCCAAGAGCTTTGGTTCATCATCACAGATATTTTCTGGTGCATTCCCTGAGAATTATGAACCTCCCAGTAGTTTCTACTATGAAGTAAATGATGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTGGCAGCAGCAATATCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACTTGGTTCCGACAATTGGACAAGTTTATTCACTATGTTAATCAAGATGGTCGTGTTCATGCCTTATACTCAACTCCATCAATATATACTGATGCAAAACATGCTGCCAAGGAGGCCTGGCCAATCAAGACTGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTATTGGACTGGGTATTTTACAAGCAGGCCAGCAATCAAAGGTTATGTCAGATTCATGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAATATTTTAAAGGGAAGAGTCCCTTATGTCCCAAAACTGACTCTTTGGCTGAAGCCTTGGCTATTGCTCAACATCATGACGCGGTATCTGGTACAGAAAAGCAGCATGTTGCTAATGATTATGCTAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCATTATCACTTGCTTGTTTGACAGAGGGAGCAACCAAAACAGGTTGTAAGAACCCACAGACTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTTCTCAAATGGGAAAAACTTGGTAGTTGTTGTTTACAACGCTCTAGGATGGAAAAGAGAGGATATCATAAGGATTCCTGTTGTCAATGAAAATGTTGTTGTTCGGGATTCCAGTGGGAAAAACATCCAATCCCAGCTGGTGCCAATACTTGACGATTTTCGTGGTTTAAGAAACTACCACACTGTCGCATACTTGGGAGTGTCTCCAACTGCAAAACCCAAATACTGGCTTGCTTTTGCAGCAACAGTTCCCCCCATTGGTTTTAGCACTTACTATGTATCCTATGCCAAAAAAGAAGCTACTATTTCAGATAGAGATACAGCTTACCAACCAGGGAATAAGAGTGATACAATTACAGTGGGCCTAAAAAACTTGAACCTAGTTTATTCTGTGAAGGACGGGAAACTTATTCAATATATCAACAGCAGAAGCAAGGTCAATGAATCTCTAGAGCAGGCATATAAATTTTACGCTGGGTATGGAAATGATGGAACAGAAACTGCTCAGGCTTCTGGAGCATATATTTTCCGCCCTGATGGTTCACCCTCTCCCATCAAATCCAACGGGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAGTCCATGGATATACCAGACTACTAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAGTTCATTGTTGGACCTATACCCATTGATGATCGAGTTGGCAAAGAAATTGCAACTGAGATCAAAACAAATCTAGCAAGCAACAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAGAAGACTGGCACTTGGAAGTAAATCAACCTGTTGCTGGAAATTACTACCCTATCAACCTTGGAATTTACCTGAAAGATAAAAGCAAAGAGTTCTCTATATTGGTAGATAGAGCCGTGGGGGGCTCCAGCATCATAGATGGACAATTGGAGCTAATGGTTCATAGGAGGTTACTTGAGGATGATTCCAGAGGTGTTGCAGAGGCACTGAATGAAACAGTTTGCATTCATGATAACTGCACTGGGTTAACTGTGCTTGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCCAGATGGCGCCGATCATTTGCTCAGGAGATATACTCACCCTTGCTTTTAGCCTTCACAGAGGGTGAAGGTCACTGGGGAGATTCTCATGTCACAACCTTCTCAGCAATAGATTCCTCATACAACTTACCAGATAATGTTGCCATAATAACCCTCCAGGATCTGGGTGATGGAAGAGTTCTCCTACGGTTGGCACACTTATACGAGATTGATGAGGACAAGTATCTTTCAGTGAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCAACAAGCAGATAAACAAAATAACTGAAGTGAGCTTATCAGCAAACCAAGAAAGAGCAGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCTCCAGAACCCAAGGTGTGGAGGGGAGGACCAGTAGATCCAGAAAATCTAATTGTAGAACTTGCTCCAATGGAAATAAGGACTTTTATCATCAGTTTTAGGCATTAA	3039	0.4205	MENTGLCVLCFILLLLGCVISSECKYIRYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVTALLADKNRKFIYVEQAFFQRWWREQSDDIQNIVKELVNSGQLEFINGGFCMHDEAATHYIDMIDQTTLGHQFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSKSFGSSSQIFSGAFPENYEPPSSFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAAKEAWPIKTDDFFPYADRVNAYWTGYFTSRPAIKGYVRFMSGYYLAARQLEYFKGKSPLCPKTDSLAEALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVALSLACLTEGATKTGCKNPQTKFQQCPLLNISYCPASEVDFSNGKNLVVVVYNALGWKREDIIRIPVVNENVVVRDSSGKNIQSQLVPILDDFRGLRNYHTVAYLGVSPTAKPKYWLAFAATVPPIGFSTYYVSYAKKEATISDRDTAYQPGNKSDTITVGLKNLNLVYSVKDGKLIQYINSRSKVNESLEQAYKFYAGYGNDGTETAQASGAYIFRPDGSPSPIKSNGKSPLTVFRGPIVHEVHQKISPWIYQTTRLYKGKEHAEVEFIVGPIPIDDRVGKEIATEIKTNLASNKTFYTDSNGRDFIERVRDYREDWHLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGSSIIDGQLELMVHRRLLEDDSRGVAEALNETVCIHDNCTGLTVLGKYYFRIDPVGEGARWRRSFAQEIYSPLLLAFTEGEGHWGDSHVTTFSAIDSSYNLPDNVAIITLQDLGDGRVLLRLAHLYEIDEDKYLSVKATVELKKVFPNKQINKITEVSLSANQERAEMERKRLVWQVKGSPPEPKVWRGGPVDPENLIVELAPMEIRTFIISFRH*	1013

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g1391	1012	SUPERFAMILY	Glycoside hydrolase/deacetylase	29	353	IPR011330	GO:0005975
	Gso6g1391	1012	SMART	Alpha_mann_mid_2	357	431	IPR015341	GO:0004559\|GO:0006013
	Gso6g1391	1012	Pfam	Alpha mannosidase middle domain	357	449	IPR015341	GO:0004559\|GO:0006013
	Gso6g1391	1012	PANTHER	ALPHA-MANNOSIDASE	14	1011	-	-
	Gso6g1391	1012	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	356	450	IPR028995	-
	Gso6g1391	1012	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	901	1007	IPR041147	-
	Gso6g1391	1012	Gene3D	-	886	1012	-	-
	Gso6g1391	1012	SUPERFAMILY	Galactose mutarotase-like	463	1010	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Gso6g1391	1012	Gene3D	-	601	868	-	-
	Gso6g1391	1012	Gene3D	Glycoside hydrolase family 38, central domain	321	397	IPR037094	GO:0004559\|GO:0006013
	Gso6g1391	1012	Pfam	Glycosyl hydrolases family 38 C-terminal domain	606	820	IPR011682	GO:0004559\|GO:0006013
	Gso6g1391	1012	Pfam	Glycosyl hydrolases family 38 N-terminal domain	41	352	IPR000602	GO:0004559\|GO:0006013
	Gso6g1391	1012	Gene3D	Glycoside hydrolase family 38, central domain	398	455	IPR037094	GO:0004559\|GO:0006013
	Gso6g1391	1012	PANTHER	ALPHA-MANNOSIDASE	14	1011	-	-
	Gso6g1391	1012	CDD	GH38N_AMII_LAM_like	40	316	-	-
	Gso6g1391	1012	Gene3D	Glycoside hydrolase 38, N terminal domain	40	320	IPR027291	-
	Gso6g1391	1012	Gene3D	-	477	600	IPR013780	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g1391	Gso-Chr6	13688098	13696804	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g1391	9	924	Glycoside Hydrolase	AT5G13980	69.664	0.0	1332

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g1391	K01191		-	gmx:100802094	2047.71

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso6g1391	6	13688098	13696804	Gso6g1391	6	13688098	13696804	ECH
	Gso4g1695	4	46959465	46968070	Gso6g1391	6	13688098	13696804	GST