LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1695	ATGGAGAACACTGCTCTGTGTGTACTATGGTTTATACTACTCTTGTTGGGGTGTGTCATTTCCTCAGAATCTAAGTATATAAGATACAACACAACATCGACCATTGTTCCTGGGAAACTCAACGTTCACTTGGTCCCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGGGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTACCTGCATTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAGCAGGCATTTTTCCAGCGATGGTGGAGGGAACAAAGTGATGCTATCCAGAACATAGTCAAGGAACTGGTCAACACTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTACCCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTATCAAAGAAGAATTTGGAGTGACTCCGAGAATAGGGTGGCAGATTGATCCGTTTGGACATTCTGCTGTGCAGGCCTACTTGTTGGGGGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCTAAGAGAAAAGATGAAAAAACTCTTGAAGTTGTGTGGCGGGGCTCCAAGAGCCTTGGTTCATCAGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAACCTCCTAGTAATTTCTACTATGAAGTAAATGACGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTGGCAGCTGCAATATCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACCTGGTTTCGGCAATTGGACAAGTTTATTCACTATGTTAATCAAGATGGCCGTGTTCATGCCTTATACTCGACTCCATCAATATATACTGATGCAAAACATGCTGCCAATGAGGCCTGGCCAATAAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTACTGGACTGGGTATTTTACAAGCAGGCCAGCAATCAAAGGTTATGTCAGATTGATGAGTGGCTACTACTTGGCAGCGAGGCAGTTGGAATATTTTAAAGGGAAGAGTGCCTTAGGTCCCAACACTGACTCTTTGGCTGAAGCTTTGGCTATTGCTCAACACCATGACGCAGTATCTGGTACAGAAAAGCAGCATGTTGCTAATGATTATGCTAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCAGTATCACTTGCTTGCTTGACAGAGGGAGCAACCAAAACAGGTTGTAGGAACCCACAGACTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTTCTCAAATGGGAAAAACTTGGTAATTGTTGTTTACAATCCTCTAGGATGGAAAAGAGAGGATATCATAAGAATTCCTGTTGTCAATGAAAATGTTGTTCGGGATTCTAGTGGGAAAAAGATCCAATCCCAGCTGGTGCCGATACTTGATGATTTTCTTGGTTTAAGAAACTACCACACTGTGGCATACTTGGGAGTGTCTCCAACTGTAAAACCCAAATACTGGCTTGCTTTTTCAGCAGCTGTTCCTCCACTCGGTTTTAGCACTTACTATGTATCCTATGCCAAAAAAGAAGCTACTATTTCAGATAGAGATACAGCTTACCAATCATGGAATAAGAGTGATACAATTACAGTGGGCCTAAAAAACTTGAAACTAGTTTATTCTGTGAAGGAAGGGAAACTTACTAAATATATCAACAGCAGAAGCAAGGTCAAAGAACCTCTAGAGCAGGCATATAAATTTTACACTGGGTATGGAAATGATGGAACAGAAACTGCTCAGGCTTCTGGAGCATATATTTTTCGCCCTGATGGTTCACCTTCTCCCATCAAATCCAACGGGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAGTCCATGGATATACCAGACTACTAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAATTCATTGTTGGACCTATACCCATTGATGATGGAGATGGCAAAGAAATCGCAACTGAAATCAAAACAAATCTAGCAAGCAACAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGCACTTGGAAGTAAATCAACCTGTAGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGCAAAGAGTTTTCTATATTGGTAGATAGAGCTGTGGGGGGCTCCAGCATCATAGATGGGCAATTGGAGCTAATGGTTCATAGGAGGTTACTTCAGGATGATTCCAGAGGTGTTGCAGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGCACCGGGTTAACTGTGCTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCCAGATGGCGTCGATCATTTGGTCAGGAGATATACTCACCCTTGCTTTTAGCCTTCACAGAGAGTGAAGGTCACTGGGGAGATTCTCATGTCACAACCTTCTCAGGAATAGATTCCTCATACAACTTACCAGATAACGTTGCCATAGTAACTCTCCAGGATCTGGGTGATGGAAAAGTTCTCCTTCGGCTGGCACACTTATACGAGATTGACGAGGACAAGTATCTTTCGGTTAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCAACAAGCAGATAAACAAAATAACTGAAGTGAGCTTATCAGCAAACCAAGAAAGAGATGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCTCCAGAACCTAAGGTGTGGAGGGGAGGACCGGTAGATCCAGAAAATCTAATTGTAGAACTTGCTCCAATGGAAATAAGGACTTTTATTATCAGTTTTAGGCATTAA	3036	0.42	MENTALCVLWFILLLLGCVISSESKYIRYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWREQSDAIQNIVKELVNTGQLEFINGGFCMHDEAATHYIDMIDQTTLGHQFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSKSLGSSAQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPAIKGYVRLMSGYYLAARQLEYFKGKSALGPNTDSLAEALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAVSLACLTEGATKTGCRNPQTKFQQCPLLNISYCPASEVDFSNGKNLVIVVYNPLGWKREDIIRIPVVNENVVRDSSGKKIQSQLVPILDDFLGLRNYHTVAYLGVSPTVKPKYWLAFSAAVPPLGFSTYYVSYAKKEATISDRDTAYQSWNKSDTITVGLKNLKLVYSVKEGKLTKYINSRSKVKEPLEQAYKFYTGYGNDGTETAQASGAYIFRPDGSPSPIKSNGKSPLTVFRGPIVHEVHQKISPWIYQTTRLYKGKEHAEVEFIVGPIPIDDGDGKEIATEIKTNLASNKTFYTDSNGRDFIERVRDYRKDWHLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGSSIIDGQLELMVHRRLLQDDSRGVAEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPLLLAFTESEGHWGDSHVTTFSGIDSSYNLPDNVAIVTLQDLGDGKVLLRLAHLYEIDEDKYLSVKATVELKKVFPNKQINKITEVSLSANQERDEMERKRLVWQVKGSPPEPKVWRGGPVDPENLIVELAPMEIRTFIISFRH*	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1695	1011	SUPERFAMILY	Glycoside hydrolase/deacetylase	29	353	IPR011330	GO:0005975
	Gso4g1695	1011	Pfam	Glycosyl hydrolases family 38 C-terminal domain	605	819	IPR011682	GO:0004559\|GO:0006013
	Gso4g1695	1011	Gene3D	-	600	867	-	-
	Gso4g1695	1011	SMART	Alpha_mann_mid_2	357	431	IPR015341	GO:0004559\|GO:0006013
	Gso4g1695	1011	Coils	Coil	947	967	-	-
	Gso4g1695	1011	Pfam	Glycosyl hydrolases family 38 N-terminal domain	41	352	IPR000602	GO:0004559\|GO:0006013
	Gso4g1695	1011	Gene3D	-	477	599	IPR013780	-
	Gso4g1695	1011	PANTHER	ALPHA-MANNOSIDASE	14	1010	-	-
	Gso4g1695	1011	Gene3D	Glycoside hydrolase 38, N terminal domain	40	320	IPR027291	-
	Gso4g1695	1011	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	356	450	IPR028995	-
	Gso4g1695	1011	Gene3D	Glycoside hydrolase family 38, central domain	321	399	IPR037094	GO:0004559\|GO:0006013
	Gso4g1695	1011	SUPERFAMILY	Galactose mutarotase-like	462	1009	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Gso4g1695	1011	Pfam	Alpha mannosidase middle domain	357	449	IPR015341	GO:0004559\|GO:0006013
	Gso4g1695	1011	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	900	1006	IPR041147	-
	Gso4g1695	1011	PANTHER	ALPHA-MANNOSIDASE	14	1010	-	-
	Gso4g1695	1011	Gene3D	Glycoside hydrolase family 38, central domain	400	455	IPR037094	GO:0004559\|GO:0006013
	Gso4g1695	1011	CDD	GH38N_AMII_LAM_like	40	316	-	-
	Gso4g1695	1011	Gene3D	-	885	1011	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1695	Gso-Chr4	46959465	46968070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso4g1695	9	923	Glycoside Hydrolase	AT5G13980	70.499	0.0	1350

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g1695	K01191		-	gmx:100798150	2058.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1695	4	46959465	46968070	Gso6g1391	6	13688098	13696804	GST