Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1388 ATGGAGCCAAACGAGGAGAACGGAGGCAGCACGAGCAGGGAGGAACAGGAAGAGGCATTGGTGGCTTTGATTGAACACCGAACCCACGAAGTCAAAAACCTTCGTCACCGCATCGCTTATTATAAAACCCAGCTTGATGAAGCGGAGAAAAGGTTGCAAGATTCTGAATCCAAATTGGCTCGCCTTCGAGGTCAGACAGTGTCATCTAGAAGTACCTTAGATGATGGAATCAAAACTTTAAAGACAGAGCGCAGATCAAATAGTCCCATTGATAGAAATGAAGGTTCTACCAAAAACCGACATCAATCTAAACCAGAACTTCTTATTCCTTCAGCGAATCCAAAAATATCACAACCTGTACTGTTGCCAAAGTCTTTTTCAAAAGCTTCAATAACTTCCAGTTCTGAAGCCACTCCTGGAGTCCATAGTTCTCCTATCACAGGTGGTAGCTCTAGGGGAAAATCTGACAAGTCTCATAGTAATAGGCTTTCTTCTGAGCAGCAAAAAACTGAAGTCAAGGAGAAAGGGACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCGCCAAGCTTGGTAACCTGTCAAACAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTATGTCCTGTGAATGATCAGCTTTTTGTGACCAGTGCTCTGGATGGAGTGGTCAACTTTTGGCAAGTTCAGGCTAAGGGAGCAGGAGCTTCTCGTCTTAGCACTACTGATTGTGCATCCCAAAAGCAGAGGAGATGGCCAGAAGATTTAGCTTGGCATCCAGAGGGAAACAGCCTATTTTCAGTATACAGTGCTGATGGTGGAGACTCTCAAGTATCGATTACAAATCTGAATAAAGGACCAGGGGGAGAACGTGTAAAATTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATTCTTTGGAGTGAGCAGGATGATGAGAAGTGGAAGCCAAAGGCATTGCACAGGAATCTTCACTCATCTGCTGTAATGGGAGTTGCTGGTATGCAGCATAAGCAGATGGTGTTGTCGGTTGGTGCAGACAGGAGAATATTTGGGTATGATGTACGTGCTGGAAGAGCAGATTTCAAGCATCAGGTTGACAGTAAATGCATGAGTGTCCTGCCCAATCCGTCCGACTTCAATTTATTCATGGTTCAAACTGGGACCCACGAGAGGCAGCTTCGGTTGTTTGATATCAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGGTCTGCTGATCCTGTGATTCACATATTTGATATAAGGTATACTGCTCACAAGCCTTCCCAATCTATAAGAGTGCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCTCTTGTTATTTCCATATCATCTGATCTCAACATTGGACTGCATAAGGTTTACTCTTGA 1602 0.4307 MEPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLARLRGQTVSSRSTLDDGIKTLKTERRSNSPIDRNEGSTKNRHQSKPELLIPSANPKISQPVLLPKSFSKASITSSSEATPGVHSSPITGGSSRGKSDKSHSNRLSSEQQKTEVKEKGTKRKFEQKEHKELIPLIRKSSSPSLVTCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADGGDSQVSITNLNKGPGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDDEKWKPKALHRNLHSSAVMGVAGMQHKQMVLSVGADRRIFGYDVRAGRADFKHQVDSKCMSVLPNPSDFNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRVHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1388 533 SMART WD40_4 304 347 IPR001680 GO:0005515
Gso6g1388 533 SMART WD40_4 353 393 IPR001680 GO:0005515
Gso6g1388 533 SMART WD40_4 491 530 IPR001680 GO:0005515
Gso6g1388 533 SMART WD40_4 449 486 IPR001680 GO:0005515
Gso6g1388 533 SMART WD40_4 203 244 IPR001680 GO:0005515
Gso6g1388 533 SUPERFAMILY WD40 repeat-like 210 530 IPR036322 GO:0005515
Gso6g1388 533 MobiDBLite consensus disorder prediction 60 118 - -
Gso6g1388 533 Coils Coil 31 65 - -
Gso6g1388 533 Pfam WD domain, G-beta repeat 463 486 IPR001680 GO:0005515
Gso6g1388 533 Gene3D - 131 405 IPR015943 GO:0005515
Gso6g1388 533 MobiDBLite consensus disorder prediction 132 154 - -
Gso6g1388 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gso6g1388 533 MobiDBLite consensus disorder prediction 60 75 - -
Gso6g1388 533 MobiDBLite consensus disorder prediction 132 179 - -
Gso6g1388 533 MobiDBLite consensus disorder prediction 155 179 - -
Gso6g1388 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 531 - -
Gso6g1388 533 MobiDBLite consensus disorder prediction 76 101 - -
Gso6g1388 533 Gene3D - 406 533 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1388 Gso-Chr6 13629639 13637679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1388 - - gmx:100799587 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1388 6 13629639 13637679 Gso6g1388 6 13629639 13637679 ECH
Gso4g1698 4 47022028 47028886 Gso6g1388 6 13629639 13637679 GST