Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1302 ATGCCATATGCAAAAATGTCTCCTCCCCTAATGGAATTAAGTGCTTCCACTCTAGTACTTTACCCTGCATCACAGCCACCACAAGAGCCTAAAAATGAGAACAATGGGGGCATAGTTTTTGACTCAAAAAATTTGCAGCAAATGCAAGGGGAAATGCCCAAAGAGTTCCTTTGGCCTTCTAGGGACTTGGTTGACACCACCCAAGAGGAGCTAAAGGAACCCCTTGTGGACCTAGCAATCTTTAAGAATGGTGACGAGAAAGCTATTTCCAATGCAGCAGAGCTTGTGAGAAAAGCATGCTTGAAGCATGGGTTTTTCCAAGTGATAAACCATGGTGTGGACCCAGATCTCATTGATGCTGCATATCATGAAATTGACTCCATTTTTAAGCTCCCATTGAGCAAAAAGATGGGTGCTAAGAGAAAACCTGGTGGTGTCTCAGGGTACTCTGGTGCTCATGCAGATCGTTATTCGTCCAAGTTGCCATGGAAAGAGACGTTTTCTTTCCTCTATGATCACCAAAGCTTCTCCAACTCCCAGATTGTTGACTACTTCAAGTCTGTGTTAGGGGAGGATCTTCAACACACAGGGAGGGTATATCAAAAGTACTGCGAGGCAATGAAGGATTTATCTTTAGTAATTATGGAGCTATTGGGTATTAGTTTGGGTGTGGATCGTGAGCATTATCGAAGATTTTTTCAAGATGGTGACTCAATAATGAGGTGCAACTATTATCCACCTTGCAACAGAGCGAACCTCACCTTAGGCACTGGCCCTCACACTGATCCAACCTCACTAACCATTCTTCATCAAGACCAAGTTGGAGGTTTAGAAGTTTTTGTAGATAACAAATGGCTCGCTGTTCGCCCTCGATCTGAAGCCTTAGTCATAAACATAGGTGATACTTTCATGGCATTGTCAAATGGGAGATACAAGAGTTGTCTACACAGGGCATTGGTGAACACATACAGGGAGAGAAGGTCCCTTGTTTATTTTGTGTGTCCAAGAGAAGACAAAATAGTGAGGCCCCCAGACAATTTGTTATGCAGAAATGAGGAAAGGAAGTACCCTGATTTCACATGGTCCAATTTGTTTGAATTCACACAGAAGCACTATAGGGCTGATGTTGCTACCCTCCAAAGCTTCATTGAGTGGCAGCAATGCTCTAATTCCAACCCTTCCAACTTCTAG 1191 0.4341 MPYAKMSPPLMELSASTLVLYPASQPPQEPKNENNGGIVFDSKNLQQMQGEMPKEFLWPSRDLVDTTQEELKEPLVDLAIFKNGDEKAISNAAELVRKACLKHGFFQVINHGVDPDLIDAAYHEIDSIFKLPLSKKMGAKRKPGGVSGYSGAHADRYSSKLPWKETFSFLYDHQSFSNSQIVDYFKSVLGEDLQHTGRVYQKYCEAMKDLSLVIMELLGISLGVDREHYRRFFQDGDSIMRCNYYPPCNRANLTLGTGPHTDPTSLTILHQDQVGGLEVFVDNKWLAVRPRSEALVINIGDTFMALSNGRYKSCLHRALVNTYRERRSLVYFVCPREDKIVRPPDNLLCRNEERKYPDFTWSNLFEFTQKHYRADVATLQSFIEWQQCSNSNPSNF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1302 396 SUPERFAMILY Clavaminate synthase-like 49 374 - -
Gso6g1302 396 PRINTS Isopenicillin N synthase signature 96 113 - -
Gso6g1302 396 PRINTS Isopenicillin N synthase signature 260 281 - -
Gso6g1302 396 PRINTS Isopenicillin N synthase signature 295 321 - -
Gso6g1302 396 Pfam non-haem dioxygenase in morphine synthesis N-terminal 74 174 IPR026992 -
Gso6g1302 396 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 235 335 IPR005123 -
Gso6g1302 396 Pfam 2OG-Fe(II) oxygenase superfamily 237 335 IPR044861 -
Gso6g1302 396 Gene3D - 43 373 IPR027443 -
Gso6g1302 396 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 34 389 - -
Gso6g1302 396 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 34 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1302 Gso-Chr6 12714859 12719945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1302 51 373 Glycosyltransferase AT5G59530 29.326 1.55e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1302 K05282 - gmx:100816834 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1775 4 47906195 47910902 Gso6g1302 6 12714859 12719945 GST