Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1280 ATGAATTCTCAATTCGCAAACACTATCGATATTAAGCTCCAACTCCCAAAACCCTTCTTCCCTCGCAAAACCCCTTTCCCCCAATTTCCCCACTCTTCACCTCGCTTTCTCACCACCAGATTCTTCCCTCGCAACTTCACGAATCGATGCAAACTCAGAATCACCGCATCCAATTCTCCTTCCGACACAGCCTCTCCCAAGCAAGAGCAAGAACAAGAACAAGACGCCGAATCCGCTCAACTATTCGAGAAACTGAAGGAGACGGAGAGGAAGCGGATGAATGAGTTGGAGGAATTTGACAAGAAGGCGAATGTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCAGAGCTTTGTTGACTTTGCGTGGAAAACTGAAGGGAACTGAGTGGGATCCTCAGAATTCACACAGGATAGACTACAGCGATTTTTTAAGACTTCTTGACTCTAACAATGTCCAGTTTATGGAGTACTCTAATTACGGTCAAACAATATCAGTTATTCTACCATATTACAAAAATGGGAAACCAATAGGAACTGAAGGGAATCCTAAGGATATTATTTTTCAGCGCCATCCAGTCAATAGAATGCCAATTGATAGTTGGAATGATGTTTGGAGAAAGCTACATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATGCCGTGCCTGCTGAAATATACTCCACTATTGCAGTTGCAGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAATATATGCGAAGTTGATACCTTGTGATTTGGGAACTCCTGGCCAAAAAACTACGCAGCCATTAAGAAGTCGTGCACTTGGATCTCTAGGCCAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAATGAACTACAAGAGATTGTCCGAATTTTAAAGAATGATGAAGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTCTACTGGCTAAAGCTATCGCAGGTGAAGCAGGGTTGCCATTTTTTGCAGCTAATGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGACCTTTTTGCAAATGCAAGATCATTTTCACCTTCTATAATCTTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGCCCTGACATTGGCGGAGGAGGTGCTGAAAGGGAACAAGGTTTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTTCTCGTGATAGGTGCCACAAATAGATTGGATATTCTTGATCCTGCTCTATTGAGGAAGGGTCGTTTTGACAAGATCATTAGAGTTGGTTTGCCATCAGAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCGAGGAATAAATTTTTTCGCTCTGAGGAGGAAAAGGAGACTCTACTTAAGGAAATTGCTGAACTGACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGACGAGATGAGCTGCTTGAGGCATTAAAGAGGCAAAAGGGAACATTTGAAACAGGGCAAGAGGATAGTACCGAAATTCCTGAAGAATTAAAACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTAGCATGTTATTTTCCCGAGCCCCACCGTCCTTTTCTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCGTTATGCTGAAATTTCTGGCCAGGTTTTTGCAAGGAAATTAGATTACATAAACTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTTGGGATTGACAATTTGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAAGCGTGCAGAGTTTTTAATTCTGCAGACAGGCATGACTGCTTTTGGGAAAGCATATTACAAAAACTATAGTGACCTTGTGCCCAGTCTTGCAATGAAGCTTGAAGCACTTCGAGATGAGTATATGCGTTATGCTACAGAGAAGTGCTCATCTGTGCTAAAAGAGTACCATTTGGCTGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATTTGGGACATTTATAGGGGTGCTCCTCGTGTAGCTCAGCCTGCTGTCAGTCCAGTTGATGAATTTGGGGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCGCCAGGCAATGTTGGATTTGCGACCTTTGGTGCTCCTCGCCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGATAAAAAGGTTCAAAACATTAAAGATGAAGCTTCAAAGGTGATTGAAGAAGAGAAGGAAAAGCCACAACTTTTGATGGCAAGCCATTTTCTTTGA 2544 0.423 MNSQFANTIDIKLQLPKPFFPRKTPFPQFPHSSPRFLTTRFFPRNFTNRCKLRITASNSPSDTASPKQEQEQEQDAESAQLFEKLKETERKRMNELEEFDKKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPQNSHRIDYSDFLRLLDSNNVQFMEYSNYGQTISVILPYYKNGKPIGTEGNPKDIIFQRHPVNRMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEIYSTIAVAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPGQKTTQPLRSRALGSLGQSRAKFISAEERTGVTFDDFAGQEYIKNELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFANARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRFAILKVHARNKFFRSEEEKETLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPEPHRPFLETDINSIRSQPNMRYAEISGQVFARKLDYINSIVRACAPRVIEEEMFGIDNLCWISAKATLEASKRAEFLILQTGMTAFGKAYYKNYSDLVPSLAMKLEALRDEYMRYATEKCSSVLKEYHLAVETITDILLEKGQIKAEEIWDIYRGAPRVAQPAVSPVDEFGALIYAGRWGIHGISLPGRVTFAPGNVGFATFGAPRPTETQIVSDETWKLVDDIWDKKVQNIKDEASKVIEEEKEKPQLLMASHFL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1280 847 Gene3D Peptidase M41 562 748 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso6g1280 847 Pfam ATPase family associated with various cellular activities (AAA) 344 478 IPR003959 GO:0005524|GO:0016887
Gso6g1280 847 Gene3D - 480 560 - -
Gso6g1280 847 MobiDBLite consensus disorder prediction 54 77 - -
Gso6g1280 847 Coils Coil 71 98 - -
Gso6g1280 847 SUPERFAMILY FtsH protease domain-like 569 749 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso6g1280 847 PANTHER METALLOPROTEASE M41 FTSH 38 816 - -
Gso6g1280 847 Coils Coil 497 524 - -
Gso6g1280 847 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 38 816 - -
Gso6g1280 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 553 IPR027417 -
Gso6g1280 847 CDD AAA 341 479 - -
Gso6g1280 847 Pfam AAA+ lid domain 508 548 IPR041569 -
Gso6g1280 847 SMART AAA_5 340 481 IPR003593 -
Gso6g1280 847 ProSitePatterns AAA-protein family signature. 449 467 IPR003960 GO:0005524|GO:0016887
Gso6g1280 847 Gene3D - 289 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1280 Gso-Chr6 12498023 12506651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1280 277 588 Miscellaneous Gene Families AT3G47060 45.192 2.04e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1280 - - gmx:100804743 1660.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1794 4 48153305 48163683 Gso6g1280 6 12498023 12506651 GST