Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1794 ATGAATTCTCAAATTGCAAACACCATCGATATCAGGCTCCAACTCCCAAAACCCTTCTTCCCTCGCAAAATCCCTTTCCCCTTATTTCCTCACTCTTCACCTCGCTTTCTCACCACCACATTCCCCTCTCGCAACTTCTCAAATCGATGCAAACTCAGAATCACCGCTTCCAATTCTCTTTCCGACTCAACCAATCCCAACCAAGAGCAAGACGCCGAATCCGCTCAACTATTCGAGAAACTGAAGGAGGCGGAGAGGAAACGGATGAATGAGTTGGAGGAATTTGACAAGAAGGCGAATGTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCAGAGCTTTGTTGACTTTGCGTGGAAAACTGAAGGGAACGGAATGGGATCCTGAGAACTCACACAGGATAGACTACAGTGATTTTTTGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTATTCTAATTACGGTCAAACAATATCAGTTATTCTACCATATTACAAAAATGGGAAACCGACGGGAACTGAAGGAAATACTCAGGGTATTATTTTTCGGCGTCATCCAGTCAATATAATGCCAATTGATAGTTGGAATGATGTTTGGAGAAAGCTACATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATGCCGTGCCTGCTGAAATATACTCAACTATTGCAGTTGCAGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAATATATGCCAAGTTGATACCTTGTGATTTGGGAACTCCTAGCCAAAAAACTACACAGCCACTAAGAAGTCGTGCACTTGGATCTCTAGGCCAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAATGAACTACAAGAGATTGTCCGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGTATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTCTACTGGCTAAAGCCATAGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAATGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGACCTTTTTGCAAATGCAAGAGCATTTTCACCTTCTATAATCTTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATAGGCGGAGGAGGTGCTGAAAGGGAACAAGGTTTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTTCTCGTGATAGGTGCCACAAATAGATTGGATATTCTTGATCCTGCTCTATTGAGGAAAGGTCGTTTTGACAAGATCATTAGAGTTGGTTTGCCATCGGAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCACTCTGAGGAGGAAAAGGAAACTCTACTTAAGGAAATTGCTGAACTGACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGGCGAGATGAGCTGCTTGAGGCATTGAAGAGGCAAAAGGGAACATTTGAAACAGGGCAAGAGGATAGTACTGAAATTCCTGAAGAATTAAAATTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTTTTTCCCCGAGCCCCACCGTCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCATTATGCTGAAATTTCTGGCCAGGTTTTTGCAAGGAAATCAGATTACATAAACTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTTGGGATTGACAACTTGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAAGCATGCAGAGTTTTTAATTCTGCAGACAGGCATGACTGCTTTTGGGAAAGCATATTACAAAAACTATAGTGACCTTGTGCCCAATCTTGCAATGAAGCTTGAAGCACTTCGAGATGAGTATATGCGTTATGCCACAGAGAAGTGCTCATCTGTGCTAAAAGAGTACCATTTGGCTGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCGTGTAGCTCAGCCTCCTGTCAGTCCAGTTGATGAATTTGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGATAAAAAGGTTCAAAACATTAAAGATGAAGCTTCAATGGTGATTGAAGAAGAGAAGGAAAAGCCACAGCTTTTGATGGCGAGCCATTTTCTTTGA 2532 0.4198 MNSQIANTIDIRLQLPKPFFPRKIPFPLFPHSSPRFLTTTFPSRNFSNRCKLRITASNSLSDSTNPNQEQDAESAQLFEKLKEAERKRMNELEEFDKKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDYSDFLRLLDSNNVQFMEYSNYGQTISVILPYYKNGKPTGTEGNTQGIIFRRHPVNIMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEIYSTIAVAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSQKTTQPLRSRALGSLGQSRAKFISAEERTGVTFDDFAGQEYIKNELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFANARAFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRFAILKVHARNKFFHSEEEKETLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACFFPEPHRPFVETDINSIRSQPNMHYAEISGQVFARKSDYINSIVRACAPRVIEEEMFGIDNLCWISAKATLEASKHAEFLILQTGMTAFGKAYYKNYSDLVPNLAMKLEALRDEYMRYATEKCSSVLKEYHLAVETITDILLEKGQIKAEEIWDIYKSAPRVAQPPVSPVDEFGALIYAGRWGIHGISLPGRVTFAPGNVGFATFGAPRPTETQIVSDETWKLVDDIWDKKVQNIKDEASMVIEEEKEKPQLLMASHFL* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1794 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 549 IPR027417 -
Gso4g1794 843 Pfam ATPase family associated with various cellular activities (AAA) 340 474 IPR003959 GO:0005524|GO:0016887
Gso4g1794 843 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 38 812 - -
Gso4g1794 843 Gene3D Peptidase M41 558 745 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso4g1794 843 Coils Coil 500 520 - -
Gso4g1794 843 SMART AAA_5 336 477 IPR003593 -
Gso4g1794 843 Coils Coil 67 94 - -
Gso4g1794 843 PANTHER METALLOPROTEASE M41 FTSH 38 812 - -
Gso4g1794 843 ProSitePatterns AAA-protein family signature. 445 463 IPR003960 GO:0005524|GO:0016887
Gso4g1794 843 CDD AAA 337 475 - -
Gso4g1794 843 SUPERFAMILY FtsH protease domain-like 565 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso4g1794 843 Gene3D - 476 556 - -
Gso4g1794 843 Pfam AAA+ lid domain 504 544 IPR041569 -
Gso4g1794 843 Gene3D - 285 474 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1794 Gso-Chr4 48153305 48163683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1794 270 584 Miscellaneous Gene Families AT3G47060 45.079 7.43e-68 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1794 - - gmx:100782783 1654.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1794 4 48153305 48163683 Gso6g1280 6 12498023 12506651 GST