Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1276 ATGAGAGGAACAATGTCAATGGGTAATTCTCCTCATGCCGTTGAAGCTCGACACCGTTTGCCTGCATCCATTGAAGAATTATACAAACGAAGACTTCCAAGAAGCAAAGTCAAAGATGCAGAGAAGCCTTTCCACTTATCTGTCCAAGATAGGAGCTCAAGATGCAAATTGTCTTTCTTAAAACTTATACTATTGATAACCATATGCGGCACTTTTGTAACACTCCTGTACTCTCCGGAAGTTTACAATACCAACCATTTATCAAGCTCTGGCTCTCGGTGGATATGGGGTGGCTCAGATCCTCGTTACATGTCCAATGTAGCCACTGACTGGGATGACATATTGAAAATTACAGAAAAGCTGACAGGGGAAGATGAACTTGAAGGAATTGGGCTTGTAAATTTCAACAAGACTGAACTAGCACAATGGGAGCATCTTATTCCTGAGGCAACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAGAAATGTGACATGGGAGTCCTTGTACCCGGAATGGATCGATGAGGAAGAAGAAACCCAAGTTCCCGTTTGTCCTTCTCTGCCAAGTCTAAGGTCCCCTGGCATAAGACTTAACCTCATTACTGTGAAGCTTCCTTGTAGGAATGGAGGGAACTGGTCTAGAGATGTTGCTCGGTTGCACCTTCAGCTTGCAGCTGCTTCCCTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTCTTCGTTACCAACTGCTTTCCAATACCAAATTTGTTTACGTGTAAAGAACTCGTTGCACGCCATGGGAATGCGTGGTTATACAAACCAAACTTGAGTGTTTTGAGAGAAAAGGTCCAGCTTCCTGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGAAAAGAGTTGGTTTACAACGGGAATGCTGCCAGAGAAGCATATGCAACAATTCTGCATTCAGCTCATGTTTACGTTTGTGGGGCTATAGCTGCGGCACAAAGCATCCGCATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGTTATCACCGAAGTGGTCTGGAAGCAGCAGGTTGGAAGGTTAGAACAATACAAAGGATCAGAAACCCCAAAGCTGAAAAGGATGCTTACAATGAATGGAACTACAGCAAGTTCAGGCTATGGCAACTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAATATAGATTTTCTATTTGGAATGCCAGAAATCACTGCCACTGGAAACAATGCCACTCTCTTTAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATCAATGAGATTGAGTCTTACAATGGAGGGGACCAGGGATATTTGAATGAAATATTCACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGTGATGAGGAAGAGAAGAAACAAATGAAAACTCTGTTGTTTGGCGCAGAACCTCCAATCTTGTATGTCCTTCACTATCTAGGTGTGAAGCCATGGTTATGCTTCCGGGACTACGATTGCAACTGGAATGCTGATATATTTCATGAATTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTACATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAGGCTGAAATAGCAAACTACACGGACGAGCATTGGCAAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACAAATTGGACAGATGATGAGTTTTATACTCCAACACCACCTACCGTTACCACAGCATCTCTTTCTGCTCTATGA 1920 0.4328 MRGTMSMGNSPHAVEARHRLPASIEELYKRRLPRSKVKDAEKPFHLSVQDRSSRCKLSFLKLILLITICGTFVTLLYSPEVYNTNHLSSSGSRWIWGGSDPRYMSNVATDWDDILKITEKLTGEDELEGIGLVNFNKTELAQWEHLIPEATHVVLPLEYAARNVTWESLYPEWIDEEEETQVPVCPSLPSLRSPGIRLNLITVKLPCRNGGNWSRDVARLHLQLAAASLATSFKGNYPVYVLFVTNCFPIPNLFTCKELVARHGNAWLYKPNLSVLREKVQLPVGSCELALPMRGKELVYNGNAAREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISSYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTLLFGAEPPILYVLHYLGVKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDEHWQIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYTPTPPTVTTASLSAL* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1276 639 Pfam Glycosyl transferase family 8 313 519 IPR002495 GO:0016757
Gso6g1276 639 PANTHER GLYCOGENIN SUBFAMILY MEMBER 22 616 - -
Gso6g1276 639 SUPERFAMILY Nucleotide-diphospho-sugar transferases 307 552 IPR029044 -
Gso6g1276 639 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 304 554 IPR029044 -
Gso6g1276 639 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 22 616 - -
Gso6g1276 639 CDD GT8_Glycogenin 307 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1276 Gso-Chr6 12450318 12457318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1276 15 639 Glycosyltransferase AT3G18660 66.511 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1276 K20890 - gmx:100809361 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1799 4 48210737 48217787 Gso6g1276 6 12450318 12457318 GST
Gso5g1618 5 39492920 39498075 Gso6g1276 6 12450318 12457318 PCT
Gso6g1276 6 12450318 12457318 Gso5g1618 5 39492920 39498075 PCT