Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1618 ATGGATACTTCCCCACGTGCCGGTGAAGGTAGACACCGTTTTCCAGCATCCATTGTAGATTTATACAGACGGAGATTACCAAAAAGGAATGCAAAAGATGTTGAAAAGCCTATCCAGTTATCCATCCAAGATAGAAGCTCAAGATGCAACTTTTCTTTCTTAAAACCTTTTGTCTTATTGATGACCATTTGCGGCACTTATGTAACGCTTCTGTATTCTCCAAAGGTTTACAACAACAACCATTTATCAAGCTCTGGCTCCGGGCCAAATTTTGTGAACAGGTGGATATGGGATGGTTTAGATCCTCGGTATGTATCGAATGTAGATATTAACTGGGGTGATATATTGCAAATTACTGCGAAACTGACAGGGAAAAAAGAATTTCAAGGGGTTGGACTTGTAAACTTCAACAATACTGAACTAGACCATTGGGAACAGCTTATTCCTAATGCCACACATGTTGTTCTGGAGCTAGAGTATGCTGCAAAAAATGTGACATGGGAATCCCTATACCCAGAATGGATTGATGAGGAAGAAGAAACCGAAGTCCCGGTTTGTCATTCTCTTCCAAGTCTTAGATCTCCTGGAATAAGGCTCAATCTCATAGCTGTGAAGCTTCCTCATGTCAATGGGGGGAATTGGTCTAGAGATGTTGCTCGGTTACACTTGCAGTTAGCAGTAGCTAGGCTTGCAACCTCTTTCAAAGGCAATTATCCCGTGTACGTGCTTTTTGTTACCAACTTCTTTCCAATACCTAATTTGTTTACCTGCAAAGAACTTGTGGGACATGAAGGGGATGTGTGGTTATACAAACCAAACTTGAAAGTTTTGGGAGAAAAACTCCACCTTCCAGTTGGATCTTGTGAACTTGCACTTCCTTTGAGGGGCAAAGAGCTGAGTTATGTGGGAAATGTTCGTAGAGAAGCATATGCAACAATTCTCCATTCAGCTCACGTTTATGTTTGTGGAGCTATTGCCGCTGCACAAAGCATCCGCATGTCCGGTTCAACTCGAGACCTAGTAATACTTGTTGATGAGACAATAAGTGAGTACCACAGAAGTGGTTTAGAAGCAGCAGGGTGGAAAATCAGGACAATACAAAGAATCAGAAATCCAAAGGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCCGTTTGTGGCAGCTTACAGAATATGACAAGATAATATTCATTGATGCAGATTTGCTCATCCTAAGAAATATAGATTTCCTATTTGGAATGCCAGAAATCACTGCAACTGGAAATAATGGCACTCTTTTCAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTCCTCATGGATCATATTAATGAGTTTGAGTCCTACAATGGAGGGGACCAGGGATACTTAAATGAAATATTCACATGGTGGCACAGGATACCAAGACACATGAACTTTCTGAAGCATTTTTGGGTTGGTGATGAGGAAGAGAAGAAACAAATGAAGACTTTGTTATTTGGTGCAGACCCTCCAATTCTCTATGTGCTTCACTATCTAGGAATGAAGCCATGGTTGTGCTTCCGGGACTATGATTGTAACTGGAACAGTGATATCTTTCACGAGTTTGCAAGTGATGTTGCTCATGGAAGGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTCTTGCAACAGTTTTGCATGTTGAAGTCAAAGCAGAAGGCACAGTTGGAATGGGATCGTAGGCAAGCTGAAATAGCTAACTACACAAATGGGCATTGGCAAATTAAAGTTAAAGATAAGAGGTTGAAGAAATGCATTGATAACTTGTGCTCATGGGAAAACATGTTGAAGCATTGGGGAGAGACCAATTGGACTGATGATGAGTCTTATACTCCAACTCCACCAGCCATTTCCACATCATCCCTTTCTGATTTGTGA 1923 0.4145 MDTSPRAGEGRHRFPASIVDLYRRRLPKRNAKDVEKPIQLSIQDRSSRCNFSFLKPFVLLMTICGTYVTLLYSPKVYNNNHLSSSGSGPNFVNRWIWDGLDPRYVSNVDINWGDILQITAKLTGKKEFQGVGLVNFNNTELDHWEQLIPNATHVVLELEYAAKNVTWESLYPEWIDEEEETEVPVCHSLPSLRSPGIRLNLIAVKLPHVNGGNWSRDVARLHLQLAVARLATSFKGNYPVYVLFVTNFFPIPNLFTCKELVGHEGDVWLYKPNLKVLGEKLHLPVGSCELALPLRGKELSYVGNVRREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTEYDKIIFIDADLLILRNIDFLFGMPEITATGNNGTLFNSGVMVVEPSNCTFKLLMDHINEFESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTLLFGADPPILYVLHYLGMKPWLCFRDYDCNWNSDIFHEFASDVAHGRWWKVHDAMPELLQQFCMLKSKQKAQLEWDRRQAEIANYTNGHWQIKVKDKRLKKCIDNLCSWENMLKHWGETNWTDDESYTPTPPAISTSSLSDL* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1618 640 SUPERFAMILY Nucleotide-diphospho-sugar transferases 308 553 IPR029044 -
Gso5g1618 640 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 305 555 IPR029044 -
Gso5g1618 640 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 16 617 - -
Gso5g1618 640 CDD GT8_Glycogenin 308 553 - -
Gso5g1618 640 Pfam Glycosyl transferase family 8 314 520 IPR002495 GO:0016757
Gso5g1618 640 PANTHER GLYCOGENIN SUBFAMILY MEMBER 16 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1618 Gso-Chr5 39492920 39498075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1618 7 640 Glycosyltransferase AT3G18660 64.110 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1618 K20890 - gmx:100783884 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1618 5 39492920 39498075 Gso4g1799 4 48210737 48217787 PCT
Gso5g1618 5 39492920 39498075 Gso6g1276 6 12450318 12457318 PCT
Gso4g1799 4 48210737 48217787 Gso5g1618 5 39492920 39498075 PCT
Gso6g1276 6 12450318 12457318 Gso5g1618 5 39492920 39498075 PCT