Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1244 ATGGCTTCGACTTCAATCACTACCTTGTCCATCTACTCTCACTCCCAACCAAAGTTCCTCAATCTGCTTCAACACCCCCTCATTCACACCCGCAACAAAAGCACATCAATTACGTTTAAGCCAGCGATAGTTCGCGCCACCCTTTTCTCTACACTCACTTGTTCTCACACCCCTTCCACACCCTCTTCAAATTTACCACCGGGAAGGGCTTTAACCAAGTTCCTCTCAGAAAAGGTAGCATTTTTCCTCATTGGGTCGTTTCTCTTATCGGGTTGCTTCAGCAAAAGGCCTGCATTCGCAGAAACAGCTCCTTCCGTGGGTTCTGGAGCAGTGTTGGAGGAGAAAATGAATCCCACTGAAGAGAAAAACGAGGAAGAGAAAAGTGAGGAAGAGGTGGAGGAAATGTGGGAGGGCATTTTGGAGAAGGATCCGAAAAACGTTGAGGCTCTGAAGGTGGTTTTGTATGGGAAGATTAGGAGAGGGAAATCGAAGGAGGCTGTGAAGGTTGTGGAGGATTTGATTGCTGCGGAGCCGAATGAGGTGGAGTGGAGGCTCTTGCTTGCACTTTGTTATGAGACTATGGGGCAGTTGAGTAAGGCTAAAAGATTGTTCAGGGAAATCTTGAAGAAGAGGCCTCTTCTAGTCAGAGCTCTTCATGGTTTGGCTATGGCAATGCACAAAAACCATGAAGGTCCTGCTGTATTTGAAATGCTAAATAATGCTCAAGAGTTAGCTTCTCGCGAAAACAGAGTTACCGAGGAGAGAAATATAAGAATCTTAATTGCGCAAATGCATGTTGTCCAGGGTAATTTGGAGGAGGGCTTGAAAAGATTTCAAGAATTGATTGATCAAAATCGTCGAGATTTTAGGCCTTATATTTGCCAGGGAATAATATACAGTCTCCTGGGTAAAAATGAGGAAGCGGCACAGCAGTTTGAAACATATCAAACTCTTGTGCCTGAAGAATTTCCTCAGAGACGATTCCTCGATGATGTTGCCATAGCAGCAAAAAGATCATCCCTGGAACAGTTTAAGAAGGAATTCAGAGATCAATTTTCTTATCGGAAATAG 1071 0.4435 MASTSITTLSIYSHSQPKFLNLLQHPLIHTRNKSTSITFKPAIVRATLFSTLTCSHTPSTPSSNLPPGRALTKFLSEKVAFFLIGSFLLSGCFSKRPAFAETAPSVGSGAVLEEKMNPTEEKNEEEKSEEEVEEMWEGILEKDPKNVEALKVVLYGKIRRGKSKEAVKVVEDLIAAEPNEVEWRLLLALCYETMGQLSKAKRLFREILKKRPLLVRALHGLAMAMHKNHEGPAVFEMLNNAQELASRENRVTEERNIRILIAQMHVVQGNLEEGLKRFQELIDQNRRDFRPYICQGIIYSLLGKNEEAAQQFETYQTLVPEEFPQRRFLDDVAIAAKRSSLEQFKKEFRDQFSYRK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1244 356 Pfam Tetratricopeptide repeat 159 218 - -
Gso6g1244 356 SUPERFAMILY TPR-like 130 321 IPR011990 GO:0005515
Gso6g1244 356 PANTHER OS05G0182100 PROTEIN 1 347 - -
Gso6g1244 356 Gene3D Tetratricopeptide repeat domain 111 338 IPR011990 GO:0005515
Gso6g1244 356 SMART tpr_5 181 214 IPR019734 GO:0005515
Gso6g1244 356 SMART tpr_5 255 288 IPR019734 GO:0005515
Gso6g1244 356 SMART tpr_5 289 322 IPR019734 GO:0005515
Gso6g1244 356 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1244 Gso-Chr6 12083747 12087862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1244 - - gmx:100798720 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1828 4 48559783 48564173 Gso6g1244 6 12083747 12087862 GST