Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1828 ATGACGTCAACTTCAATCACTACCTTTTCCATCTACTCCCAATCCCAACCAAAGTTCCTCAATTTGCTTCAACACCCACTCATTCACACCCGCACCAAACGCACATCAATTTCGTTTCAGCCACCGATAGTTCGCGCCACCCTTTTCTCTACATTCACTTCTTCCCACACCCCTTCCACACCCTCCTCAAATTTCCCATCTGGAAGGGCTTTATCCAAATTCCTCTCAGAAAAGGTTGCATTTTTCCTCATTGGGTCGTTTCTCTTATCGGGTTGCTTCAGCAAAAGATCTGCCTTCGCAGAAGCAGCTCCTTCCGTGGGCTCTGGCGCAGTGTTGGAGCAGAATATGAATCCCACTGAAGAGAAAAACGAGGAAGAGAAAAGTGAGGAAGAGGTGGAGGAAATGTGGGAGAGCATTTTGGAGAAGGATCCGAAAAATGTTGAGGCTCTGAAGGTGGTTTTGTATGGGAAGATTAGGAAAGGGAAGTCGAAGGAGGCTGTGAAGTTTGTGGAGGATTTGATTGCTGCGGAGCCGAATGAGGTTGAGTGGAGGCTCTTGCTGGCACTTTGTTATGAGACTATGGGGCAATTGAGCAAGGCTAAAAAATTGTTCAGGGAAATCTTGAAGAAGAGGCCTCTTCTAGTTAGAGCTTTGCATGGTTTGGCTATGGCGATGCACAAAAATCATGAAGGCCCTGCTGTATTTGAAATGCTAAATAATGCTCAAGAGTTAGCTTCTCGTGAAAATAGAGTTACTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGTTGTCCAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAGGGTATAATATACAGTCTCCTGGGTAAAAATGAGGAAGCAGCACAACAGTTTGAAACATATCAAACTCTTGTACCTGAAGAATTTCCTCAGAGAGGATTTCTTGATGATGTTGCCATAGCAGCAAAAAGAACATCCCTGGAACAGTTTAAGAAGGAATTTAGGGATCAATTTTCTTATCGGAAATAA 1071 0.4295 MTSTSITTFSIYSQSQPKFLNLLQHPLIHTRTKRTSISFQPPIVRATLFSTFTSSHTPSTPSSNFPSGRALSKFLSEKVAFFLIGSFLLSGCFSKRSAFAEAAPSVGSGAVLEQNMNPTEEKNEEEKSEEEVEEMWESILEKDPKNVEALKVVLYGKIRKGKSKEAVKFVEDLIAAEPNEVEWRLLLALCYETMGQLSKAKKLFREILKKRPLLVRALHGLAMAMHKNHEGPAVFEMLNNAQELASRENRVTEERNIRILIAQMHVVQGNLEEGLKRFQELIDQNPRDFRPYICQGIIYSLLGKNEEAAQQFETYQTLVPEEFPQRGFLDDVAIAAKRTSLEQFKKEFRDQFSYRK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1828 356 PANTHER OS05G0182100 PROTEIN 2 347 - -
Gso4g1828 356 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 2 347 - -
Gso4g1828 356 SUPERFAMILY TPR-like 130 321 IPR011990 GO:0005515
Gso4g1828 356 SMART tpr_5 255 288 IPR019734 GO:0005515
Gso4g1828 356 SMART tpr_5 289 322 IPR019734 GO:0005515
Gso4g1828 356 SMART tpr_5 181 214 IPR019734 GO:0005515
Gso4g1828 356 Gene3D Tetratricopeptide repeat domain 108 335 IPR011990 GO:0005515
Gso4g1828 356 ProSiteProfiles TPR repeat profile. 255 288 IPR019734 GO:0005515
Gso4g1828 356 Pfam Tetratricopeptide repeat 160 218 - -
Gso4g1828 356 Pfam Tetratricopeptide repeat 263 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1828 Gso-Chr4 48559783 48564173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1828 - - gmx:100795327 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1828 4 48559783 48564173 Gso6g1244 6 12083747 12087862 GST