Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1219 ATGGCCGCGCGAGCTCTGTTGACCAGAAAAACCCTAGCCACCGTGCTCCGCAACGACGCGAAGCCCATAATCGGAGTTGGCATAACCGCAGCGGCTACTCATTCACGCGGGTTGCACGTGTACACGCTACCCGATCTGGATTACGACTATGGCGCACTGGAGCCAGCCATCAGCGGCGACATCATGCAGCTGCACCACCAGAAGCACCACCAGACTTACATCACCAACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGGTCATGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCACTGGGATGGGCTATTGACACACATTTTGGTTCTTTTGAAGCATTAATACAAAAAGTTAACGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTAGTTGAAACCACTGCCAACCAGGACCCACTGGTTACTAAGGGACCAAATTTGGTTCCATTGATTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTTAGACCAGACTATCTTAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAG 726 0.4972 MAARALLTRKTLATVLRNDAKPIIGVGITAAATHSRGLHVYTLPDLDYDYGALEPAISGDIMQLHHQKHHQTYITNYNKALEQLQDAIAKKDSSAVVKLQGAIKFNGGGHVNHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFEALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPNLVPLIGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1219 241 Gene3D - 122 241 IPR036314 -
Gso6g1219 241 Gene3D Fe,Mn superoxide dismutase (SOD) domain 58 121 IPR036324 -
Gso6g1219 241 ProSitePatterns Manganese and iron superoxide dismutases signature. 202 209 IPR019833 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PANTHER SUPEROXIDE DISMUTASE 32 240 - -
Gso6g1219 241 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 126 238 IPR036314 -
Gso6g1219 241 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 37 122 IPR036324 -
Gso6g1219 241 PIRSF MnSOD_FeSOD 14 241 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 Coils Coil 74 94 - -
Gso6g1219 241 Pfam Iron/manganese superoxide dismutases, C-terminal domain 131 233 IPR019832 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 41 121 IPR019831 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PANTHER SUPEROXIDE DISMUTASE 2 32 240 - -
Gso6g1219 241 PRINTS Manganese superoxide dismutase signature 44 55 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PRINTS Manganese superoxide dismutase signature 65 78 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PRINTS Manganese superoxide dismutase signature 104 117 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PRINTS Manganese superoxide dismutase signature 160 168 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso6g1219 241 PRINTS Manganese superoxide dismutase signature 200 212 IPR001189 GO:0004784|GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1219 Gso-Chr6 11839839 11843938 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1219 K04564 - gmx:100785490 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1852 4 48793753 48797499 Gso6g1219 6 11839839 11843938 GST