Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1852 ATGGCCGCGCGAGCCCTGTTGACCAGAAAAACCCTAGCCACCGTTCTCCGCAACGACGCGAAGCCCATAATCGGAGCTGGCATAGCTGCAGCTACTCATTCTCGTGGGTTGCACGTGTACACGCTCCCCGATCTGGATTACGACTATGGCGCTCTGGAGCCAGCCATCAGCGGCGAAATCATGCAGCTGCACCACCAGAAGCACCACCAGACTTACATCACCAACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCACTGGGATGGGCCATTGACACACATTTTGGCTCTTTTGAAGCATTAGTACAAAAAGTTAATGCAGAAGGTGCTGCACTACAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTAGTTGAAACCACTGCCAACCAGGACCCACTGGTTACTAAGGGACCAAATTTGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAG 723 0.5035 MAARALLTRKTLATVLRNDAKPIIGAGIAAATHSRGLHVYTLPDLDYDYGALEPAISGEIMQLHHQKHHQTYITNFNKALEQLQDAVAKKDSSAVVKLQGAIKFNGGGHVNHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFEALVQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1852 240 Gene3D - 121 240 IPR036314 -
Gso4g1852 240 Gene3D Fe,Mn superoxide dismutase (SOD) domain 57 120 IPR036324 -
Gso4g1852 240 PANTHER SUPEROXIDE DISMUTASE 2 22 239 - -
Gso4g1852 240 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 125 237 IPR036314 -
Gso4g1852 240 PIRSF MnSOD_FeSOD 16 240 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 Pfam Iron/manganese superoxide dismutases, C-terminal domain 130 232 IPR019832 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 ProSitePatterns Manganese and iron superoxide dismutases signature. 201 208 IPR019833 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PRINTS Manganese superoxide dismutase signature 43 54 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PRINTS Manganese superoxide dismutase signature 64 77 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PRINTS Manganese superoxide dismutase signature 103 116 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PRINTS Manganese superoxide dismutase signature 159 167 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PRINTS Manganese superoxide dismutase signature 199 211 IPR001189 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 37 121 IPR036324 -
Gso4g1852 240 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 40 120 IPR019831 GO:0004784|GO:0006801|GO:0046872
Gso4g1852 240 PANTHER SUPEROXIDE DISMUTASE 22 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1852 Gso-Chr4 48793753 48797499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1852 K04564 - gmx:100101896 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1852 4 48793753 48797499 Gso6g1219 6 11839839 11843938 GST