Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1211 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACAAAAGGTGGCAAAGTCATGAAGCAAGTGCGGGAGCACTATCTGCGCGATGATATATACTGCGGCGCACCGTTTTGCACAGTTTGCGATTCTTCCGGTGCTCGCCTCAGTGCTTCTCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATCGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCAATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACAAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTGATAACTAATGATAAAGAGAACAAAAGAAAGGCTAGTGAAGAGGGCATTTTGGCTGAAACAGTTGAGTCATATGTGAAGTCTTTAGTCCGACCTGATTTACTTGACCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTATTCTGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAATCATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCGTCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGAATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAGCTGTTTCTCAGCAGGGTTCTTCTGAACAACTAAATGCTGTACCCAGTCGTCCTTGTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAATGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAACTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGCGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGAAGATAGATGATAGAGATACTGAAACTGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCCGGAAGGATTTGTGTCATCTGTGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACTCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACAGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCCGACATTATTTCTACCAGATACACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCAAGGATGGATGATAGTCGTTTGATGGATCCAATTACTGCTGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAGATTGACACAGAGACTCATGACCCCCTTGATATTGGAATGTACCAGATCCGGGAGGCCAATCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAATAGTTTTCCATTGGTCTCATTATTAAGGCGTCATCCAACACCAACTAGAGAGATGCTTGAACCCTTGTTACAGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCATCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCTTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGTGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCCAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCTGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACCGAGGCTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGATCAACAGCAGAAGATTAAAAAGATGGACGGTAGCCTTTCATACAGTGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCAAACCGACCAAAACTTCAGCTTACCCTCATCTAG 2805 0.4307 MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSGARLSASPSTILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLVRPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRSIMNRAFDGDIVAAELLPQDQWQGVSSLSIAHEEDEDENEDVHLAPNSADDAPRAVSQQGSSEQLNAVPSRPCGRIVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALFVSKDRRTPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGKIDDRDTETEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLCHLCVFSVDPPGCKDIDDALHCHSLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILNSFPLVSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDDQQQKIKKMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1211 934 CDD PIN_Rrp44-like 9 180 - -
Gso6g1211 934 SUPERFAMILY Nucleic acid-binding proteins 851 930 IPR012340 -
Gso6g1211 934 SUPERFAMILY Nucleic acid-binding proteins 215 424 IPR012340 -
Gso6g1211 934 SMART RNB_2 471 802 IPR001900 GO:0003723|GO:0004540
Gso6g1211 934 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 934 - -
Gso6g1211 934 SUPERFAMILY Nucleic acid-binding proteins 429 847 IPR012340 -
Gso6g1211 934 MobiDBLite consensus disorder prediction 299 335 - -
Gso6g1211 934 Gene3D - 351 427 - -
Gso6g1211 934 SMART PIN_9 52 165 IPR002716 -
Gso6g1211 934 ProSitePatterns Ribonuclease II family signature. 769 793 IPR022966 -
Gso6g1211 934 Gene3D - 207 312 - -
Gso6g1211 934 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Gso6g1211 934 Pfam Rrp44-like cold shock domain 219 318 IPR033771 -
Gso6g1211 934 Gene3D - 9 191 - -
Gso6g1211 934 MobiDBLite consensus disorder prediction 319 335 - -
Gso6g1211 934 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Gso6g1211 934 Pfam S1 domain 852 920 IPR033770 -
Gso6g1211 934 Pfam RNB domain 471 800 IPR001900 GO:0003723|GO:0004540
Gso6g1211 934 Gene3D - 851 934 IPR012340 -
Gso6g1211 934 Pfam PIN domain 54 177 IPR002716 -
Gso6g1211 934 PANTHER RIBONUCLEASE 3 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1211 Gso-Chr6 11756864 11778235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1211 K12585 - gmx:100782456 1842.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1857 4 48835453 48851356 Gso6g1211 6 11756864 11778235 GST