Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1857 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGTGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCATCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCAATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCAATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTATAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGCATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTTCTCAGCAGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCAGGAAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACGTCCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCCGAAGCAGATATTATTGCCACCTCATACACAAAAAGTGTCATAAAATCTTCTGCGGCATTGTCTTATGTTGAAGCACAGGCAAGGATGGACGATAGTCGATTGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGACCCACTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCAGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCGTCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGGATATCCAAGTTACCACCTGTATTTCAAGACAGTCTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGTAGCCTTTCATACAACGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACCCTCATCTAG 2802 0.4368 MLHNKSFVKKTKGGKVIKQVREHYLRDDIYCGAPFCTVCDSSSARLSASPSIILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAELLPQDQWQGVSSLSIAHEDEDEDEDVHLAPNSADDAPRTISQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLRVFSVDPPGCKDIDDALHCHVLPNGNFEVGVHIADVTNFVYPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIIATSYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPPVFQDSLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEGRIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQQQKIKKMDGSLSYNVLQTVQIHMEVVEPQPNRPKLQLTLI* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1857 933 CDD PIN_Rrp44-like 9 180 - -
Gso4g1857 933 SMART RNB_2 470 801 IPR001900 GO:0003723|GO:0004540
Gso4g1857 933 Pfam RNB domain 470 799 IPR001900 GO:0003723|GO:0004540
Gso4g1857 933 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 933 - -
Gso4g1857 933 ProSitePatterns Ribonuclease II family signature. 768 792 IPR022966 -
Gso4g1857 933 Gene3D - 350 425 - -
Gso4g1857 933 MobiDBLite consensus disorder prediction 317 335 - -
Gso4g1857 933 Pfam Rrp44-like cold shock domain 219 318 IPR033771 -
Gso4g1857 933 SUPERFAMILY Nucleic acid-binding proteins 428 846 IPR012340 -
Gso4g1857 933 MobiDBLite consensus disorder prediction 300 336 - -
Gso4g1857 933 Pfam Dis3-like cold-shock domain 2 (CSD2) 372 439 IPR041505 -
Gso4g1857 933 Gene3D - 207 311 - -
Gso4g1857 933 Gene3D - 850 933 IPR012340 -
Gso4g1857 933 SMART PIN_9 52 165 IPR002716 -
Gso4g1857 933 Pfam S1 domain 850 919 IPR033770 -
Gso4g1857 933 PANTHER RIBONUCLEASE 3 933 - -
Gso4g1857 933 Pfam PIN domain 54 177 IPR002716 -
Gso4g1857 933 Gene3D - 9 192 - -
Gso4g1857 933 SUPERFAMILY Nucleic acid-binding proteins 850 929 IPR012340 -
Gso4g1857 933 SUPERFAMILY PIN domain-like 53 186 IPR029060 -
Gso4g1857 933 SUPERFAMILY Nucleic acid-binding proteins 215 422 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1857 Gso-Chr4 48835453 48851356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1857 K12585 - gmx:100806652 1837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1857 4 48835453 48851356 Gso6g1211 6 11756864 11778235 GST