Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1063 ATGGGAGTTGTGACTGTTTCTAGCTCGGCTGCTCGGACTCCATTGGGATTGAATACAAAGTTTTGCAATAATCGTCTGAAGAGACCTTTAATTGTAGCATTTAAGGGGGATAAGCACAATGACTCAGCTTTGGTTGCAACACAAGAGAAAATTCCTGTGCCGGTTGAAACGGCGAAGAAGACGCAGAAAAAGAGGATAGGAAAAACTAACAAACTACCTAAGAGAGAGAGTTCTCCATCTTCCATGGATGTGGACTACAATGAAGCTGCTGCCATGCTTGAAAATCTATACAAACTTAGCCCTGCTTCTGATAATGCAGAATGCATAGATGGTAAAATCAAAAGAGTCTCTCGGAGAGGGAAGAAGGTTGTTGATGAAAGTGAAGAAAAGGAGTTAAAGGGCGATTGGGTGGTCAGAAACCAGAACAAGAACAAGAAACCTAAACGATTGAATCTTGATCAGAGAATTTCATTAAAGAATAACAAAAGTGGGGACGAAGTCATTCCAACTCGAAAGAAAAGAAATGTTGGGAACAAAATTGAGAAGATTGAAGAACTTATTCGGGAATATTCAGTATCAACTGATTTTGTCAGTATGGATTGGAAAAGAATGAGAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCACTGCTTCAAGTGAAAGAAGATTTACAGCAGGAGTTGACAAGAGAACCTGCAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTACACAAGTAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAGCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGCTTATAACAGCAATCGATCGTTTTGAGCCAAACAGGAGATTTCGGCTATCAACTTATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGGTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGTTCATATATCCCCTGAAAGATACCATGACGTAATTAAGGCATCAAAATCCATTCTTTCTCTGAACTCGAGACATACAACCACACAAGAGGAGTTCATTAATGGGATCGTTGATGATGATGGTGTTAATGGTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGAATATATCTAGGGAAATGGTTAGAAAGCACGAAGTCAAGGCTCTTATGAAGCTCAAGCATTCAGCTAGATTGGATTATCTTCGCCGTTATGTTGTATAA 1524 0.4016 MGVVTVSSSAARTPLGLNTKFCNNRLKRPLIVAFKGDKHNDSALVATQEKIPVPVETAKKTQKKRIGKTNKLPKRESSPSSMDVDYNEAAAMLENLYKLSPASDNAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1063 507 Pfam Sigma-70 region 2 273 339 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 Gene3D - 220 263 IPR036388 -
Gso6g1063 507 Gene3D - 346 398 IPR036388 -
Gso6g1063 507 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 507 - -
Gso6g1063 507 Gene3D - 430 507 IPR036388 -
Gso6g1063 507 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 507 - -
Gso6g1063 507 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 500 IPR013324 -
Gso6g1063 507 Pfam Sigma-70 region 3 228 267 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 Pfam Sigma-70 region 3 358 425 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 Gene3D - 264 341 - -
Gso6g1063 507 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 348 420 IPR013324 -
Gso6g1063 507 MobiDBLite consensus disorder prediction 57 82 - -
Gso6g1063 507 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 191 340 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 PRINTS Major sigma-70 factor signature 300 313 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 PRINTS Major sigma-70 factor signature 324 332 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 PRINTS Major sigma-70 factor signature 446 458 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 PRINTS Major sigma-70 factor signature 467 482 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 PRINTS Major sigma-70 factor signature 482 493 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 269 495 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 Pfam Sigma-70, region 4 442 495 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gso6g1063 507 Coils Coil 352 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1063 Gso-Chr6 10330226 10333796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1063 K03093 - gmx:100812580 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1063 6 10330226 10333796 Gso14g1347 14 39369550 39374618 PCT