Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1018 ATGGTTGGCAAGGATAATCTGAGGGCTGAGGACTTGAACTTGTGCTTTAAGAAGCTTATGATGGTGGCCGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATCACCGAGTGGAAGGATATTCCTGTGGAGCTTCTGATGCAAATTCTGTCCCTTGTGGATGATCAGACGGTGATCATAGCTTCTGGAGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGTTCCTAAATTCGCAAAACTGCAAACTCTAATCCTCCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAAATGCTGTCATGAACTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTAACTGATCGTTCACTCTATGAGCTCGCCCTTGGTTGTCGTGATCTTACAAAACTCAACATCAGCGGGTGTTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCCAGCTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGATGTGTTAGAGCTGCATCCGATACTGCATTACAGGCTATTGGACAATACTGCAATCAGCTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGCGATGTTGGAGTGACTACTTTAGCATATGGGTGTCCAGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGACAGTGTGATTGCTTTGGCGACTAGATGCCCCCATCTGAGGTCCCTAGGACTGTACTACTGCAAGAACATCACAGATAGAGCAATGTATTCCTTGGCACACAGCAAGGTGAACAACAGGATGTGGGGAACTGTGAAAGGAGGAGGAAATGATGAAGATGGTTTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCATCTGCTGTACAAGCTGTTTGTGACTCATTCCCTTCTCTCCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACATCAGTGCATTGTGCCTGTGCTGTCCATGCGCACCGTGCATTCACCACTTTCCCTTATCCTGCCCATTAA 1119 0.4602 MVGKDNLRAEDLNLCFKKLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVIIASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLEDNAVETIAKCCHELQILDLSKSFKLTDRSLYELALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALATRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRMWGTVKGGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTTFPYPAH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1018 372 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Gso6g1018 372 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 354 - -
Gso6g1018 372 Gene3D - 39 80 - -
Gso6g1018 372 SUPERFAMILY RNI-like 79 352 - -
Gso6g1018 372 Pfam F-box domain 42 76 IPR001810 GO:0005515
Gso6g1018 372 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Gso6g1018 372 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Gso6g1018 372 Gene3D Ribonuclease Inhibitor 81 295 IPR032675 -
Gso6g1018 372 PANTHER UNCHARACTERIZED 1 354 - -
Gso6g1018 372 SMART LRR_CC_2 261 286 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 303 328 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 209 234 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 235 260 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 156 181 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 103 129 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 182 208 IPR006553 -
Gso6g1018 372 SMART LRR_CC_2 130 155 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1018 Gso-Chr6 9908863 9912402 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1018 K03875 - gmx:100797840 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2031 4 50683883 50687412 Gso6g1018 6 9908863 9912402 GST
Gso14g1266 14 33325751 33330351 Gso6g1018 6 9908863 9912402 PCT
Gso13g0206 13 11423294 11427599 Gso6g1018 6 9908863 9912402 PCT
Gso6g1018 6 9908863 9912402 Gso14g1266 14 33325751 33330351 PCT
Gso6g1018 6 9908863 9912402 Gso13g0206 13 11423294 11427599 PCT