Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1015 ATGGCATCCTGGTTATTGGGAAGGTCGAGTAGGATCTTGATTCATCAACATCACCACCTTCACAAAAAGTACTTGCCTTTCTTGTTAGGACCATTTCTTAACCATAATAATAGCTCTTGTTCCTCTTTTCCATCAACTGAACCATTTAGGTGCCGTGATGCATTTCCGGGTAAGAACTCATCACCCACCCTCTTCCGATTCTCGCGTCATGAATCAACCAAAGCTGAGGCACAATTGGAATTGGAGCAAGATGTTGCCACCGAGGATGAGCCTAATCAGGTCATTGATTTTCCTGGAGGGAAAGTGGGATTTACTTCTGAAATGAGATTCATTTCTGAGTCTCCTGAGAAAAGGGTGCCCTGTTATCGTGTTCTTGATGACAATGGTGAGATCGTTAAATACAGCAACTATGTACAGGTTAGCAAGGAAATGGGTGTGAAGATGTATTCTGACATGGTCACTCTTCAAACTATGGACAACATATTCTATGAAGTGCAGAGGCAAGGTAGAATTTCCTTCTACCTCACCCAAATGGGGGAAGAAGCAGTTAACATTGCATCTGCTGCTGCACTTGCTCCTGATGATATAATATTGCCTCAGTACCGGGAGCCTGGAGTTCTATTGTGGCGTGGTTTTACACTGCAACAATTTGTTCATCAATGCTTTGGAAACACACATGATTTTGGAAAAGGCAGGCAGATGCCAATACATTATGGGTCTAACCAGCACAATTACTTCACAGTGTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTTGGAGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCAGTCACTTTTTGTGGGGATGGTGCCACCAGTGAGGGAGATTTTCATGCTGCTATGAATTTTGCAGCAGTAATGGAGGCCCCTGTTGTTTTTATCTGTCGTAATAATGGATGGGCAATCAGTACACCTGTGGAAGACCAATTTCGAAGTGATGGTATTGTAGTTAAGGGTAAAGCTTATGGCATCTGGAGCATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCACACTGCTAGAGAAATCGCTATAAAAGAAAAAAGGCCAGTTTTAATTGAGGCTCTCACTTATAGAGTTGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGGGAACTGATGAGATTGAATATTGGAAGATGGCAAGGAATCCAGTGAATAGATTCAAAAGATGGGTAGAAAGGAATGGTTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTGTCAGGAAGCAGTTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAAAAACCTCCACTTCAGGACTTATTTAATGATGTCTATGACCAAATACCATCAAACCTTCAGGAGCAAGAGAGACTAATTAGAAAAACCATCGAGAAGCATCCCAAAGACTACCCTTCTGATGTTCCTTTGTAG 1464 0.4255 MASWLLGRSSRILIHQHHHLHKKYLPFLLGPFLNHNNSSCSSFPSTEPFRCRDAFPGKNSSPTLFRFSRHESTKAEAQLELEQDVATEDEPNQVIDFPGGKVGFTSEMRFISESPEKRVPCYRVLDDNGEIVKYSNYVQVSKEMGVKMYSDMVTLQTMDNIFYEVQRQGRISFYLTQMGEEAVNIASAAALAPDDIILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHYGSNQHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGIWSIRVDGNDALAVYSAVHTAREIAIKEKRPVLIEALTYRVGHHSTSDDSTKYRGTDEIEYWKMARNPVNRFKRWVERNGWWSDKDELELRSSVRKQLMHAIQVAEKAQKPPLQDLFNDVYDQIPSNLQEQERLIRKTIEKHPKDYPSDVPL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1015 487 Gene3D - 90 485 - -
Gso6g1015 487 Pfam Dehydrogenase E1 component 152 447 IPR001017 GO:0016624
Gso6g1015 487 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 67 487 - -
Gso6g1015 487 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 119 482 IPR029061 -
Gso6g1015 487 CDD TPP_E1_PDC_ADC_BCADC 148 440 - -
Gso6g1015 487 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 67 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1015 Gso-Chr6 9856522 9863454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1015 93 325 Acyl Lipid Metabolism Gene Families AT5G09300 77.253 1.75e-137 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1015 K00166 - gmx:100796766 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1781 4 47992279 47997210 Gso6g1015 6 9856522 9863454 GST