Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1781 ATGAGGAAATTCACCACCATATTCTCCCACATCAAATCAACAAAGATGAACTTCTCCGTTTCGCTTCTTCATCGGAGCTCTCCATTTTGCCCCAATCAACCACCACACCCTAATTTCAAGAACCTCACATGGCAGAATCGCGATTCACTACTATTATTTCCCCTTCTCTGTTCGCGCCACTTTGCCTCCACTACCGCGCAGAATCCTTCCACATTGAATGCTCTTCAGGATCATTATCAGGCCATTGATTTTCCTGGAGGAGCAGTACAATTCATCCCTGAAATGAGGTTTATATCCGAATCACCTAAAGAGAGAATACCTTGCTACCGTGTCCTTGATGATAATGGGCAACCAATTTTGGGCCATAATTTTGTGCAGGTCAGCAAGGAAGTTGCTGTTAAGATGTATACTGACATGGTCACTCTCCGATCTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTGACAGCAATTGGGGAGGAGGCTATCAATGTTGCTTCAGCTGCAGCTCTTGCCATGGACGATGTTGTTTTCCCTCAGTATAGGGAAGCGGGAGTCTTGTTATGGCGTGGTTTCACTTTGCAAGAATTTGCAAACCAGTTATTTTCCAATATATATGATTATGGGAAAGGAAGGCAGATGCCAGCTCATTATGGGTCCAAAAAGCACAATTACTTTACAGTAGCATCAACTATTGCTACACAAATTTCCCATGCTGTTGGAGCCGCTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGCCGTCACTTACTTCGGTGATGGTGGCTCAAGTGAGGGTGATTTCCACGCTGCCTTAAATTTTGCAGCAGTTTTGGAGGCCCCAGTTATTTTTATATGCCGGAACAATGGATGGGCTATCAGCACACCCATTTCAGATCAGTTTCGAAGTGATGGTGTTGTTGTGAAAGGGCAGGCATATGGAGTTCGTAGCATTCGTGTAGATGGCAATGATGCCCTGGCTATCTATAGTGCTATTCAAGCTGCTCGTCAAATGGCAATTACTGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTTGGACACCACACCACATCAGATGACTCTACCAAGTATCGTCCAGCGAATGAGATTGAATGGTGGAGAGTGGCACGTGATCCTGTGGTTAGATTTAGAAAGTGGATAGAAAAGCATGGCTGGTGGAATGATATGGCTGAGTCAGAGCTTATAAACAATTTGAGACAGCAGCTTCTACATACAATTCAAGAAGCAGAGGGTGTAGAAAAACCTCCACTTGCAGATAGTTTTAGTGATGTTTATGATGTCGCTCCTTCTAATCTCCGTGAACAGGAGCAATGGCTGAAGGAGATTGTAAGAAAACAACCACAAGAGTATCCAACAAATATTTCTGTGTAG 1425 0.4309 MRKFTTIFSHIKSTKMNFSVSLLHRSSPFCPNQPPHPNFKNLTWQNRDSLLLFPLLCSRHFASTTAQNPSTLNALQDHYQAIDFPGGAVQFIPEMRFISESPKERIPCYRVLDDNGQPILGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQRQGRISFYVTAIGEEAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYDYGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDALAIYSAIQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVVRFRKWIEKHGWWNDMAESELINNLRQQLLHTIQEAEGVEKPPLADSFSDVYDVAPSNLREQEQWLKEIVRKQPQEYPTNISV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1781 474 Gene3D - 77 473 - -
Gso4g1781 474 Pfam Dehydrogenase E1 component 138 433 IPR001017 GO:0016624
Gso4g1781 474 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 57 473 - -
Gso4g1781 474 CDD TPP_E1_PDC_ADC_BCADC 135 427 - -
Gso4g1781 474 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 57 473 - -
Gso4g1781 474 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 106 469 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1781 Gso-Chr4 47992279 47997210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1781 65 312 Acyl Lipid Metabolism Gene Families AT5G09300 75.889 1.84e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1781 K00166 - gmx:100779198 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1781 4 47992279 47997210 Gso6g1015 6 9856522 9863454 GST