LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0894	ATGGCTTCTTTCCGCGCCGTGCTTCGTCACACTCACATATACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCACACCTACTATGGCGTTATTTTTAAGTCACGGCGCCACGCGGCACTGTCTTATTCCCTCCAAACCCTCCAGAACCGTTAAATCCCGAGCCAGTTCAGACAACTACAACTTAGTGTTGAAGAAAGACGAGCGCTTGGGAACTGGAGAATGCGTTGACGAGGTTGCAAGTGGGACCACAATTGCGGCCATCGTAACTTCCGTGGGAGGCCCACCTGCCGCCGTCGGAATCGTTCGACTTTCGGGCCCGGGCGCGGTGTCCATCGTGGGCCGATTGTTTCGGCCCGCAAGGAAGACGTGGCGGCCCGCCAGCCACGTCGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACGCGCGAAGACGTGGTTGAGCTTCAGTGCCACGGCAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGATTAGATCTCTCCCAAGCCGAAAACGTCGCGAGATTAATCGCCGCGAAATCTGTGGCTGCTGCAGATGCTGCATTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAATTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCACTGGATTTGAATCTGACTATGGATAAAATCCATAACATGTCAAGAGAGGTTGAGAATGCGTTGGAAACGGCAAATTATGATAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAGTGGCATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACGGATGACATTGTGGAAAAGATTGGTGTAGAGCGATCTGAAGCAGTTGCTAGGGATGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTCAACAAGATAGACTGTAAACCTTGTGCTGAGACCAAATGGGACAAAGGATGCCAGAGTCATATTTTCAGTAAACGTGTGTTTACATGTGCAGTTACTGGTCAAGGATTGCATGACTTAGAGAGGGCAGTATTACAAATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACTAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCGGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG	1647	0.4906	MASFRAVLRHTHIYISTFSCFTPPPRTPTMALFLSHGATRHCLIPSKPSRTVKSRASSDNYNLVLKKDERLGTGECVDEVASGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIVGRLFRPARKTWRPASHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARDADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETKWDKGCQSHIFSKRVFTCAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g0894	548	CDD	trmE	298	469	IPR031168	-
	Gso6g0894	548	TIGRFAM	small_GTP: small GTP-binding protein domain	301	428	IPR005225	GO:0005525
	Gso6g0894	548	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	300	469	IPR031168	-
	Gso6g0894	548	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	83	548	-	-
	Gso6g0894	548	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	20	-	-
	Gso6g0894	548	Pfam	MnmE helical domain	208	545	IPR025867	-
	Gso6g0894	548	Gene3D	tRNA modification GTPase MnmE domain 2	206	548	IPR027368	-
	Gso6g0894	548	Gene3D	-	301	476	IPR027417	-
	Gso6g0894	548	Gene3D	Probable tRNA modification gtpase trme; domain 1	73	205	IPR027266	GO:0005515
	Gso6g0894	548	Pfam	50S ribosome-binding GTPase	302	423	IPR006073	GO:0005525
	Gso6g0894	548	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	464	IPR027417	-
	Gso6g0894	548	Hamap	tRNA modification GTPase MnmE [mnmE].	84	548	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gso6g0894	548	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	98	548	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gso6g0894	548	Pfam	GTP-binding protein TrmE N-terminus	85	205	IPR018948	-
	Gso6g0894	548	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	83	548	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0894	Gso-Chr6	8543002	8547099	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g0894	K03650		-	gmx:100818096	1066.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0913	4	10081614	10085433	Gso6g0894	6	8543002	8547099	GST