LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g0913	ATGGCTGCTTTCCGCGGCGTGCTTCGTCACATACACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCATACCTACTATGGCGTTGCTTTCAAGTCAGGGTGCCATGTGGCACTGTCTTATTCCCTCCAAAGCCTCCAGAACAGTAAAATCCCGCGCCGGTTCAGAGAACTACAATAACTTAGTGTTGAAGAAAGACGAGCGCTTAGGTGCTGGAGAGTGTGTCGGCGAGGTTGGAAGTGGGACCACGATTGCGGCCATCGTAACTTCCGTGGGGGGCCCACCTGCTGCCGTTGGAATCGTTCGACTTTCTGGCCCGGGCGCAGTGTCCATTGCGGGTCGAGTGTTTCGGCCCGCCCGGAAGACGTGGCGGCCCACTAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTTTTGGCGGTTCCGATGCTGGCACCGAGGTCCTACACGCGCGAAGACGTGGTCGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCCCAAGCCGAAAACGTTGCAAGATTAATTGCCGCGAAATCCGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCCCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCACGAGAGGTGGAGAATGCGTTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTTAGTGGCATTCCTATAACACTTCTTGATACCGCCGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTATGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTAAACAAGATAGACTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAGTCATATTTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTGCATGACTTAGAGGGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGGTGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTAAGGTTACAATCATCCATAAAGGACGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG	1644	0.4927	MAAFRGVLRHIHISTFSCFTPPPRIPTMALLSSQGAMWHCLIPSKASRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGCQSHIFSKHVFTCAVTGQGLHDLEGAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKDELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g0913	547	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	82	547	-	-
	Gso4g0913	547	TIGRFAM	small_GTP: small GTP-binding protein domain	300	427	IPR005225	GO:0005525
	Gso4g0913	547	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	299	468	IPR031168	-
	Gso4g0913	547	CDD	trmE	297	468	IPR031168	-
	Gso4g0913	547	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	82	547	-	-
	Gso4g0913	547	Pfam	MnmE helical domain	207	544	IPR025867	-
	Gso4g0913	547	Pfam	GTP-binding protein TrmE N-terminus	84	204	IPR018948	-
	Gso4g0913	547	Gene3D	tRNA modification GTPase MnmE domain 2	205	547	IPR027368	-
	Gso4g0913	547	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	97	547	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gso4g0913	547	Gene3D	Probable tRNA modification gtpase trme; domain 1	75	204	IPR027266	GO:0005515
	Gso4g0913	547	Pfam	50S ribosome-binding GTPase	301	422	IPR006073	GO:0005525
	Gso4g0913	547	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	463	IPR027417	-
	Gso4g0913	547	Hamap	tRNA modification GTPase MnmE [mnmE].	83	547	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gso4g0913	547	Gene3D	-	300	475	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g0913	Gso-Chr4	10081614	10085433	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g0913	K03650		-	gmx:100779193	1066.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0913	4	10081614	10085433	Gso4g0913	4	10081614	10085433	ECH
	Gso4g0913	4	10081614	10085433	Gso6g0894	6	8543002	8547099	GST