Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0887 ATGAAAAGAAAACCCTTTGCGCTGGGTGGGTCCCAGTCCTACGAAGCTCCTTTGTACTTCCCCTATAAGTACATGAGCACCAGGCATTCTCCGTCTCAGTCCTTTTGGCTAACCATGGAGCACTTCAACAATGACGATCTCGAATACATCGTCCACTTCCAAGACGATTTTCCGACGACTGATACCACTTGTTCGGAAGCCAGAAACGGGAAAGATATTCAGGGAATCCCCTGGGAGAGGCTTAACTATAGCAGAGACAAATACCGTGAGACCAGACTCAAGCAATACAAAAATTACCAGAACTTCTCTCTCTCTCCTCACCACCTCCACAAGGAGTGTTTCCAAGTGCAGAAGGGGGAAACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTATCCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAATTATTCAGTGATGCACTGGTCCGCATTACTACAAAGAAGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTACGCATCCTGGATTCTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAATTTGAAGCAACCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGGTAATGCCATAACCAATGCCGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTAATCACAGCAAATAATGATTCCCAACTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTATTAGTCCGGATGGAAGGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATGGCTGATGCTAACTCTGGAAAGATTACTGGGAGCCTAAAGGGGCACTTGGACTACTCTTTTTCATCAGCTTGGCACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCACTAAGATTCACTTCGGACGGACGATTTTTGGCCATGGCTGAACCTGCAGACTTCGTCCATATTTTTGACTCACATTCAGGTTATGAACAAGGTCAAGAGATTGACCTATTTGGTGAGATTGCTGGCATATCCTTTAGCCCAGACACAGAAGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA 1362 0.4369 MKRKPFALGGSQSYEAPLYFPYKYMSTRHSPSQSFWLTMEHFNNDDLEYIVHFQDDFPTTDTTCSEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSLSPHHLHKECFQVQKGETFYDFFFNTRLVKSTIIHFQLRNLLWATSKHDVYLMQNYSVMHWSALLQRSKEVLNVAKPIIPTLTHPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKQPGVLFCGKITTDGNAITNAVDVYRNPAGSLRVITANNDSQLRVFDAENFASLGCFKYDWSVNNTSISPDGRLLAVLGDSTECLMADANSGKITGSLKGHLDYSFSSAWHPNGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0887 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 363 IPR001680 GO:0005515
Gso6g0887 453 Pfam WD domain, G-beta repeat 317 354 IPR001680 GO:0005515
Gso6g0887 453 Gene3D - 187 436 IPR015943 GO:0005515
Gso6g0887 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 357 - -
Gso6g0887 453 SMART WD40_4 315 354 IPR001680 GO:0005515
Gso6g0887 453 SMART WD40_4 274 312 IPR001680 GO:0005515
Gso6g0887 453 SMART WD40_4 358 397 IPR001680 GO:0005515
Gso6g0887 453 PANTHER OS03G0386000 PROTEIN 39 453 - -
Gso6g0887 453 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 39 453 - -
Gso6g0887 453 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
Gso6g0887 453 SUPERFAMILY WD40 repeat-like 194 434 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0887 Gso-Chr6 8462730 8467976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0887 240 434 Miscellaneous Gene Families AT5G08390 24.490 6.89e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0887 - - gmx:100817036 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0901 4 9825522 9830509 Gso6g0887 6 8462730 8467976 GST