Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0901 ATGGAGCACTTCAACAACGACGATCTCGAGTACGTTGTCGACGAGTACTACGACGTTCCCGATTTTGCAGTCGAAGACACCTCCTCCGACATTGTTCCTGAACTAACCTCCGATGTTGACTCCGACTTCGAAGACGAGTTTCCAACGAGTAATGCAAAGACTGATACCACTGCTTCCGAAGCCAGAAACGGGAAAGATATACAAGGAATCCCGTGGGAGAGGCTTAATTATAGCAGAGACAAATACCGCGAGACCAGACTCAAGCAGTACAAAAACTACCAGAACTTCTCTCGCTCTCGTCACGACCTCCGCAAGGAGTGTTTGGAAGTGCAGAAGGGGGAGACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACTATTGTGCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACTTTATGCAAAACTATTCAGTGATGCACTGGTCCGCATTACTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTAAGCGTCCTGGATTTTTAGCTCAACCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGTAAGAATTTGAAACATCCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACAGCAATCCTGCTGGGTCATTGAGGGTCATCACAGCAAATAATGATTTCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACCGGAAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTTCATCAGCTTGGCACCCAGATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGATTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGATTCACATCTGATGGACGATTTTTGGCCATGGCTGAGCCTGCAGACTTTGTCCATATTTTTGACTCACATTCTGGTTATGAACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGCATATCCTTTAGCCCGGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA 1344 0.439 MEHFNNDDLEYVVDEYYDVPDFAVEDTSSDIVPELTSDVDSDFEDEFPTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSRSRHDLRKECLEVQKGETFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYFMQNYSVMHWSALLRRGKEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKHPGVLFCGKITTDDNAITNAVDVYSNPAGSLRVITANNDFQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFSSAWHPDGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0901 447 Pfam WD domain, G-beta repeat 311 348 IPR001680 GO:0005515
Gso4g0901 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Gso4g0901 447 PANTHER OS03G0386000 PROTEIN 1 447 - -
Gso4g0901 447 Gene3D - 219 444 IPR015943 GO:0005515
Gso4g0901 447 MobiDBLite consensus disorder prediction 41 63 - -
Gso4g0901 447 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 447 - -
Gso4g0901 447 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Gso4g0901 447 SUPERFAMILY WD40 repeat-like 188 428 IPR036322 GO:0005515
Gso4g0901 447 SMART WD40_4 352 391 IPR001680 GO:0005515
Gso4g0901 447 SMART WD40_4 210 265 IPR001680 GO:0005515
Gso4g0901 447 SMART WD40_4 309 348 IPR001680 GO:0005515
Gso4g0901 447 SMART WD40_4 268 306 IPR001680 GO:0005515
Gso4g0901 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0901 Gso-Chr4 9825522 9830509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0901 252 428 Miscellaneous Gene Families AT5G08390 25.281 2.28e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0901 - - gmx:100775453 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0901 4 9825522 9830509 Gso4g0901 4 9825522 9830509 ECH
Gso4g0901 4 9825522 9830509 Gso6g0887 6 8462730 8467976 GST