Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0867 ATGTCAGGTGGTGGATGCAGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAAGACAATCCAGCACTGACAGCAGGAGTGAGAGCTGGTGCTGTTGTTGCAGTTTTCATATGGGCACCTGAAGAAGAAGGACAATACTACCCTGGCAGGGTCTCTAGATGGTGGCTCAAGAACAGTTTGGCTCACCTTGATTCCTCTCTCAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGATACTCTTTCTTCTCTATTTGAGGTTGTTAAGTCCACTGGAGCCACTCAACTCTTTTTTAATCATTTATATGATCCTCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGACTTATTATATGAACCATGGGATGTGAATGATGCACATGGCCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGTCTTAGCATGCCTTATGACCCTGAGTCACCTCTTCTCCCACCTAAAAGGATAATTCCAGGTGATGCATCGAGGTGCCCTAGTGATACATTGCTGTTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCGTGGTCACCCGGGTGGAGCAATGCTAACAAGGCATTGACAACATTCATAAATGGTCCACTGATTGAGTACTCAAAAAACCGCAGGAAAGCAGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCACTTTGGTGAGTTGAGTGTCAAGAAGGTCTTCCATCTAGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCTGGTGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCATCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGAACTGGGTACCCTTTGGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGAATACGTGTTGTAGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCCGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGAATAGATAATCCACAGTTTGAGGGCTACAAATTCGACCCAAATGGAGAATACGTGCGACGCTGGCTTCCAGAACTTTCAAGATTACCCACTGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTACAAGCTGCTGGAATTGAGCTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAAACAGATTACTAGAAGCACTATCAAAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAAAATGGAACGGAGGAAGGACTTGGAGACTCTTCTGAATCAGTTCCTGCTGCTTTTCCTCAAGACACGCGAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCCTTCCCATTGCTCGGCGCTACCAAGATCAGATGGTTCCAAGCATCACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACGTCTTCTGATCTTCGAAACTCAGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAACTGCAAATGCACAACAAAATGCAGGAGTTGCATTGAACGAACGGATGTTGCAGACCACTAATAGGAATACACAAACCCAATACAATACTACGATGGACCTGAGAAATGTAGCTGATGATTCTGCAGTAGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTTTAGTTCCAGTATGGTCTCCACCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATAACAAGCAGTTCATCTTACTTGCAAAGGCATCCTCAATCTCACCAAATGCTGAATTGGAAGCAGCTACCTCAAACTGGGTAA 2049 0.4539 MSGGGCSSIVWFRRDLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEALSKMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDTRMEETHEPVRNNPLPIARRYQDQMVPSITSSLLRVEEEETSSDLRNSAEESSRAEVPVTANAQQNAGVALNERMLQTTNRNTQTQYNTTMDLRNVADDSAVESSSGTRRERDGGLVPVWSPPASSYSEQFVGDENGITSSSSYLQRHPQSHQMLNWKQLPQTG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0867 682 Gene3D - 135 294 - -
Gso6g0867 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Gso6g0867 682 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Gso6g0867 682 MobiDBLite consensus disorder prediction 641 682 - -
Gso6g0867 682 PANTHER CRYPTOCHROME-1 5 598 - -
Gso6g0867 682 PRINTS DNA photolyase signature 333 349 IPR002081 -
Gso6g0867 682 PRINTS DNA photolyase signature 353 371 IPR002081 -
Gso6g0867 682 PRINTS DNA photolyase signature 392 406 IPR002081 -
Gso6g0867 682 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Gso6g0867 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 8 483 IPR014134 GO:0009785|GO:0009882
Gso6g0867 682 MobiDBLite consensus disorder prediction 615 682 - -
Gso6g0867 682 PANTHER CRYPTOCHROME 5 598 IPR002081 -
Gso6g0867 682 Pfam DNA photolyase 8 163 IPR006050 -
Gso6g0867 682 Pfam Blue/Ultraviolet sensing protein C terminal 512 627 IPR020978 -
Gso6g0867 682 Pfam FAD binding domain of DNA photolyase 284 483 IPR005101 -
Gso6g0867 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Gso6g0867 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 489 IPR036134 -
Gso6g0867 682 Gene3D HUPs 9 207 IPR014729 -
Gso6g0867 682 MobiDBLite consensus disorder prediction 555 569 - -
Gso6g0867 682 MobiDBLite consensus disorder prediction 492 580 - -
Gso6g0867 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0867 Gso-Chr6 8245632 8251081 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0867 K12118 - gmx:100797839 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0872 4 9351327 9355594 Gso6g0867 6 8245632 8251081 GST
Gso14g1462 14 45432948 45438768 Gso6g0867 6 8245632 8251081 PCT
Gso13g0630 13 20316943 20321963 Gso6g0867 6 8245632 8251081 PCT
Gso6g0867 6 8245632 8251081 Gso14g1462 14 45432948 45438768 PCT
Gso6g0867 6 8245632 8251081 Gso13g0630 13 20316943 20321963 PCT