Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0872 ATGTCAGGTGGTGGAGGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAAGACAATCCAGCACTGACAGCAGGAGTGAGAGCTGGTGCTGTGGTTGCAGTTTTCGTATGGGCACCTGAAGAAGAAGGTCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAGAACAGTTTGGCTCATCTTCATTCCTCTCTGAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGACACTCTTTCTTCTCTTCTTGAGGTTGTTAAGTCCACTGGAGCCACTCAACTTTTTTTTAATCATTTGTATGATCCCCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGATTTATTATATGAACCATGGGAAGTGAATGATGCACATGGCCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCTGAGTCACCTCTTCTCCCACCCAAAAGGATAATTCCAGGTGATGCATCCAGGTGTCCTAGTGATACATTGCTGTTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGGTGGAGCAATGCTAACAAGGCATTGACAACCTTCATAAATGGTCCACTGATTGAGTACTCAAAAAACCGCAGGAAAGCAGACAGTGCAACTACCTCACTTCTGTCCCCCCATTTGCACTTTGGTGAGTTGAGTGTTAAGAAGGTCTTCCATCTTGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCCGGCGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAACGAAGGCTATTTTAAGGCATGGAGACAAGGCAGGACTGGGTACCCTTTAGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGAATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGAATAGATAATCCACAGTTTGAGGGATACAAATTCGACCCTAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGATTACCAACCGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTACAAGCTGCTGGAATTGAGTTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACCAGATTACTAGAAGCGCTATCAGAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAGAATGGAACTGAGGAAGGACTTGGAGACTCTTCTGAATCCGTTCCTGCTGCTTTTCCTCAAGACATGCAAATGGAGGAAACTCATGAGCCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTACCAGGATCAGATGGTTCCAAGCATCACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACTTCTTCTGATCTTCGACACTCGGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAACTGCAAATGCACAACAAAATGTAGGAGTTACATTGAATGAACGGATGCTGCAGACCACTAATAGGAATGCACAAACACAATACAATACTACAATGGAGCTGAGAAATGTAGCTGAAGATTCAGCAGTAGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCTAGTTACTCAGAACAATTTGTAGGAGAGGAAAATGGTATAACAAACAGTTCATCTTTCTTGCAAAGGCATCCTCAGTCTCACCAAATGCTGAATTGGAGGCAGCTACCTCAGACTGGGTAA 2046 0.4609 MSGGGGSIVWFRRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHSSLRNLGTPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRYQDQMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGVTLNERMLQTTNRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFVGEENGITNSSSFLQRHPQSHQMLNWRQLPQTG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0872 681 Gene3D HUPs 8 206 IPR014729 -
Gso4g0872 681 MobiDBLite consensus disorder prediction 640 681 - -
Gso4g0872 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Gso4g0872 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Gso4g0872 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Gso4g0872 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Gso4g0872 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Gso4g0872 681 PANTHER CRYPTOCHROME 1 594 IPR002081 -
Gso4g0872 681 MobiDBLite consensus disorder prediction 551 574 - -
Gso4g0872 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Gso4g0872 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Gso4g0872 681 PANTHER CRYPTOCHROME-1 1 594 - -
Gso4g0872 681 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 482 IPR014134 GO:0009785|GO:0009882
Gso4g0872 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Gso4g0872 681 Pfam DNA photolyase 7 162 IPR006050 -
Gso4g0872 681 Gene3D - 134 293 - -
Gso4g0872 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Gso4g0872 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Gso4g0872 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Gso4g0872 681 MobiDBLite consensus disorder prediction 554 570 - -
Gso4g0872 681 MobiDBLite consensus disorder prediction 615 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0872 Gso-Chr4 9351327 9355594 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0872 K12118 - gmx:100233233 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0872 4 9351327 9355594 Gso4g0872 4 9351327 9355594 ECH
Gso4g0872 4 9351327 9355594 Gso6g0867 6 8245632 8251081 GST
Gso14g1462 14 45432948 45438768 Gso4g0872 4 9351327 9355594 PCT
Gso13g0630 13 20316943 20321963 Gso4g0872 4 9351327 9355594 PCT
Gso4g0872 4 9351327 9355594 Gso14g1462 14 45432948 45438768 PCT
Gso4g0872 4 9351327 9355594 Gso13g0630 13 20316943 20321963 PCT