Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0844 ATGCTCCATCAGTTCACACTCTTCGCTCCGATTTTTTCCGGCGGAAACAACGCCGGCCGTTGCTCGTTTGCCGGAAATTCGTCCGTCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGACAATCGAACAATGAACATGGTGTTTTTAGCGAGACAATGGATCGTGCCAAGCATAGGGCAACTACTGCTTATGGTGGTCGTGCTCAAGAAGGTGTTCTCGAGGAAGAATCCTCCAAGGTGATAGAGAGCAGACCATCATGGAAAGCTTTTCCAGGCCAGTCATTTCCATTGGGGGTATCAGAAGTTGACAGTGGCATCAATTTTGCTATTTTTTCACAAAATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGGGGAAGCATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGAAGCAATGTTCTGTATGGATATCGCATAGATGGACCTCGAGACTGGGGTAAGGGGCATCGATTTGATTGCAGCATTGTGCTTGTCGATCCTTATGCGAAACTAGTTGAAGGTCGAAGATATTTCGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTCGGTATGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGATGAGTTAGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCGACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAATCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAATCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGGCTATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCTAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACTCGTGTAGCTGGGTCTTCTGATCTTTACAGTGTGAACAATCGTAGGCCATATCATGGTATTAACTTTGTTATTGCACATGACGGATTCACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGGGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGTGATCACTTCCGGTTTTTCTCAAACATGATAAAGTACAGGCATGCACATGAAGTATTCAATCATGAAAGTTTTCTCAGCAAGAACGACATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAACGTAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2319 0.4252 MLHQFTLFAPIFSGGNNAGRCSFAGNSSVRDVRSLRFMKQASGRQSNNEHGVFSETMDRAKHRATTAYGGRAQEGVLEEESSKVIESRPSWKAFPGQSFPLGVSEVDSGINFAIFSQNATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPRDWGKGHRFDCSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLDSNIRGSYLGMIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKSLHSAGIEVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYSVNNRRPYHGINFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGSNDNFSWNCGLEGETDDASVRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSNMIKYRHAHEVFNHESFLSKNDITWHEDNWDNHDSKFLAFTLHDKSGGDIYLAFNAHDYFVKVLLPAPPKKRNWFRVVDTNLKSPDDFVLDGVPNVGNTYNIAPYSSILLEAKF* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0844 772 Gene3D - 679 772 IPR013780 -
Gso6g0844 772 SUPERFAMILY Glycosyl hydrolase domain 678 771 - -
Gso6g0844 772 SUPERFAMILY E set domains 95 232 IPR014756 -
Gso6g0844 772 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 100 198 IPR004193 GO:0004553|GO:0005975
Gso6g0844 772 Gene3D Immunoglobulins 81 218 IPR013783 -
Gso6g0844 772 Gene3D Glycosidases 224 678 - -
Gso6g0844 772 CDD AmyAc_Glg_debranch 228 667 - -
Gso6g0844 772 PANTHER GLYCOGEN DEBRANCHING ENZYME 74 770 - -
Gso6g0844 772 SUPERFAMILY (Trans)glycosidases 227 670 IPR017853 -
Gso6g0844 772 Pfam Alpha amylase, catalytic domain 269 624 IPR006047 GO:0005975
Gso6g0844 772 SMART aamy 248 655 IPR006047 GO:0005975
Gso6g0844 772 CDD E_set_GDE_Isoamylase_N 99 248 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0844 Gso-Chr6 8013324 8028513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0844 52 771 Glycoside Hydrolase AT4G09020 76.454 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0844 K01214 - gmx:100806342 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0844 4 8945070 8965965 Gso6g0844 6 8013324 8028513 GST