Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0844 ATGCTCCATCACCCATTACTTTACGCTTCCAAAATCGCCACTCAGTCCACACTCTTCCCTCCGGTTTCTTCCGCCGGAAACAGCGCCGGCCGTTCTTCGTTTGCCGGAAATTCGTCCGCCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGCAAATCGAACAATGAACTTGGAGTTTTTAGCGAGGAAGAAACCTCCAAGGTGATAGAGAGCAGACCATCATGGAAAGTTTTTCCAGGCCAGGCATTTCCATTGGGAGTATCAGAAGTTGACAATTGCATGAATTTTGCTATTTTTTCACAACATGCAACAGCTGTCACACTTTGTTTAGTACTTCCTGAGAGGGGAAGTATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGTAGCAATGTTCTGTATGGATATCGCATAGATGGACCTGGAGACCGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTCGAAGGTCGAAGATATTTTGGGGATATTAGCTTGAAGTTGTCTAAGTTTCTCGGCACATATGATTTTGACAGCTTGCCTTTCGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGACGAGTTGGAATTCCAGAGGTTTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTTTTTGCTCCTATGAGTCGTTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCGTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGATGGACAATAATGGGCAATTGTTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAACTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTTTGTCGAGGAATTGATGGCTCCCCCATTAATGCCCCCCCGCTTATTAGGGCAATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACTCGTGTTGCTGGGTCTTCTGATCTTTACAGAGTGAACAACCGTTGGCCATATCATAGTATTAACTTTGTTATTGCACATGACGGATTTACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATAAAGCCAATGGGGAAGGTGGAAAAGACGGAAGCAATGATAATTTCAGTTGGAATTGTGGTTTCGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGCGATCACTTCAGGTTTTTCTCAAAGGTGATAAAGTACCGGCATGCACATGAAGTATTCAGTCGTGAAAATTTTCTCAACACGAACGACATAACATGGCATGAGGACAATTGGGAGAATCCTGACAGCAAATTTCTTGCATTCACGCTTCATGACAGGAGCGGGGGAGATATCTATGTGGCATTTAATTCTCACGATTACTTTGTCAAAGTTCTGCTGCCCACACCTCCAAAAAAGAGAAACTGGTTCCGTGTGGCGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAGCGTAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2283 0.4249 MLHHPLLYASKIATQSTLFPPVSSAGNSAGRSSFAGNSSARDVRSLRFMKQASGSKSNNELGVFSEEETSKVIESRPSWKVFPGQAFPLGVSEVDNCMNFAIFSQHATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPGDRGKGHRFDSSIVLVDPYAKLVEGRRYFGDISLKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRFPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKALHSAGIEVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMMDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPINAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYRVNNRWPYHSINFVIAHDGFTLRDLVSYNFKHNKANGEGGKDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRHAHEVFSRENFLNTNDITWHEDNWENPDSKFLAFTLHDRSGGDIYVAFNSHDYFVKVLLPTPPKKRNWFRVADTNLKSPDDFVLDGVPSVGNTYNIAPYSSILLEAKF* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0844 760 Gene3D Immunoglobulins 68 205 IPR013783 -
Gso4g0844 760 Gene3D - 667 760 IPR013780 -
Gso4g0844 760 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 88 186 IPR004193 GO:0004553|GO:0005975
Gso4g0844 760 SUPERFAMILY E set domains 83 220 IPR014756 -
Gso4g0844 760 SMART aamy 236 643 IPR006047 GO:0005975
Gso4g0844 760 SUPERFAMILY (Trans)glycosidases 215 659 IPR017853 -
Gso4g0844 760 CDD AmyAc_Glg_debranch 216 655 - -
Gso4g0844 760 CDD E_set_GDE_Isoamylase_N 87 236 IPR044505 -
Gso4g0844 760 Pfam Alpha amylase, catalytic domain 257 377 IPR006047 GO:0005975
Gso4g0844 760 PANTHER GLYCOGEN DEBRANCHING ENZYME 52 758 - -
Gso4g0844 760 Gene3D Glycosidases 212 666 - -
Gso4g0844 760 SUPERFAMILY Glycosyl hydrolase domain 665 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0844 Gso-Chr4 8945070 8965965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0844 66 759 Glycoside Hydrolase AT4G09020 77.698 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0844 K01214 - gmx:100807545 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0844 4 8945070 8965965 Gso4g0844 4 8945070 8965965 ECH
Gso4g0844 4 8945070 8965965 Gso6g0844 6 8013324 8028513 GST