Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0833 ATGGCGAGCCGCTTCCTCTCCGCCGGAATCAGACGTTTTGTGTTCGGTGCACGAACTCTGTGTAGCTCCGAAGCTTCTCGCGCTTCTGCGTTCCCTATGCCGTTCGCGCGAAAATTCAAATTCTCTAAGCAGAGCCCATTGCCGGCGCTTCAAAATTGGGTGGACCAAGGCAACGATGTTTCACCCTTCCAGCTAAGAAGCATCGCCAGAACCCTCGTCAAATCGAAACTCTACCACCACGCCCTCGAGGTATTTGAATGGATAAAAAACCAGAAGAATTTCCATATGATCCCAGCTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATCATGGTCTAATGGAAGCTGAAGAATATTTTATGAATCTACCGGACTCAGCTGCAAAGAAGGCTGCATGTCTCATACTTTTACGTGGCTATGTAAGAGATAGGGACACTAGTAAAGCCGAGACTTTCATGCTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCCTTTTAATGAGATGATGAAACTATATCTAGTAACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGAAATAAAATACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTAGTGAGGAAGAAGGATATGTGGTTGCAGCAGTGGAGACAGTTTTCAGACAAATGCTAAATGACAGGAATGTTGAAGTGGGATGGGGCAGTCTTGCTACATTAGCCAATGCTTATAAGAAAGCAGGACAATCTAAGAAGGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTATCTACTTGTAACCGTCTTGGTCACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGATAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTCGTGGAAGAATCAGTTGTGCCAACTACATTTGTATACTAACATGCTTGGTGAAGCTTGGGGACATTGTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTACGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTCCGGAATGGATTAATGGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTGTCCAAACTATAAGACGTTGGAAATTCTTATGGAAGGATATGTGAATTGGCAAAAAATGGATGAGGCTATTATTACCATGAAAAGAGCTTTGGCTATGATGAAAGATTGCCATTGGAGGCCGCCGCATGGAATTGTGTTAGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTTGAATATGCAGACAAGTATATTACAGATATCCATAATTTAGGTCTTGTTAGTTTATCATTGTATAAAGTATTGCTTAGAATGCACCTTTCTGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAGTTGAGATTGATAACGAGACACTTTCCATTCTTAAAGCTTTCACTGACTGA 1491 0.4178 MASRFLSAGIRRFVFGARTLCSSEASRASAFPMPFARKFKFSKQSPLPALQNWVDQGNDVSPFQLRSIARTLVKSKLYHHALEVFEWIKNQKNFHMIPADHAMKLELIIENHGLMEAEEYFMNLPDSAAKKAACLILLRGYVRDRDTSKAETFMLKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYVVAAVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLSTCNRLGHFFLITLYASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLGDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTLEILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGIVLAIAEYLEKDGNLEYADKYITDIHNLGLVSLSLYKVLLRMHLSANKPPFHILKMMDEDKVEIDNETLSILKAFTD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0833 496 Pfam PPR repeat 348 367 IPR002885 -
Gso6g0833 496 Gene3D Tetratricopeptide repeat domain 37 234 IPR011990 GO:0005515
Gso6g0833 496 PANTHER OS12G0527900 PROTEIN 37 495 - -
Gso6g0833 496 Gene3D Tetratricopeptide repeat domain 247 435 IPR011990 GO:0005515
Gso6g0833 496 PANTHER OS02G0796400 PROTEIN 37 495 - -
Gso6g0833 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0833 Gso-Chr6 7929380 7932270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0833 50 416 EF-hand Containing Proteins AT1G02150 32.880 6.68e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0833 - - gmx:100803685 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0827 4 8754060 8757658 Gso6g0833 6 7929380 7932270 GST