Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0827 ATGGCGAACCGCTTCATTTCCGCCGGAATCAGACGTTTTGTGTTCGGTGCACGAACTCTGTGTAGCTCCGTAGATTCTCGCGCTTCCGCGTTCCACGTGCCGCTCGCGCGAAAACTCAAATCCCGTAAGCAGAGTCCATTGCCGGCGCTTAAAAATTGGGTGGACGAAGGCAACGATGTTTCACACTCTGAGCTCAGACGCATCGCCAGAACCCTCGTCAAATCGAAGTGCTACCACCACGCCCTCGAGGTAGTTAAATGGATAGAAAACCAGAAGAATTTCCATATGATCCCAGCTGATTATGCTATGAAATTGGAATTAATCATTGAGAATTATGATCTAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCAGCTGCAAAGAAGGCTGCCTGTCTCACACTTCTACGTGGCTATATAAGAGTTAGGGACACTAATAAAGCCGAGACTTTCATGGTGAAGCTCTATGAACTGGGGCTAGTGCTGAGCCCACACCCTTTTAATGAGATAATGAAACTATATCTAGCAACATGTGAGTACAGGAAAGTACCCCTTGTTATCCAGCAAATGAAGCGAAATAAAGTACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTACTGAGGAAGAAGGATATGGGGTTGCAGCAGTTGAGACAGTTTTCAGACAAATGCAAAATGATAGGAATGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGCTTATAAGAAAGCAGGACAATCTAAGAAGGCCATTCTGGTTCTCAAAGATGCTGAAAGGAAACTATCTACCTGTAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTGATATGCTTGGTGAAGCTTGGGGACATTGTACAGGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTACGATATCAGAGTGTCTAATGTTCTTTTGGGTGCATATGCGCGCAATGGATCAATGGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTGTCCAAACTATAAGACATTGGAAATTCTCATGGAAGGATATGTGAATTGGCAAAAAATGGATGAGGCTATTATTACCATGAAAAGAGCTTTGGCTATGATGAAAGATTGCCATTGGAGGCCGCCACATGGACTTGTGTTAGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTCAAATATGCAAACAAGTATATTACAGATCTCCGTAATTTTGGTCTTTTTAGTTTATCATTGTATAAAATATTGCTTAGAATGCACCTTTCTGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAATTGAGATGGATAACGAGACACTTTCCATTCTTAAAGCTTTCACTGGATGTGTTCAAGCTGAAGTGTTTGGAGGTGAAGCAGTAACCTGGAACTCAGTTTCATTCTTAGGCTTTTTCAAGGAAAATTTCAATTCTTACATCAGTATGTACGTGTTTAGGTTAAAACAAGTGGAGCTCAAATCAACAGGTGCTGAAAGATTTTGTGGGATCTGA 1653 0.4156 MANRFISAGIRRFVFGARTLCSSVDSRASAFHVPLARKLKSRKQSPLPALKNWVDEGNDVSHSELRRIARTLVKSKCYHHALEVVKWIENQKNFHMIPADYAMKLELIIENYDLMEAEEYFMNLPDSAAKKAACLTLLRGYIRVRDTNKAETFMVKLYELGLVLSPHPFNEIMKLYLATCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNACTEEEGYGVAAVETVFRQMQNDRNVEVGWSSLATLANAYKKAGQSKKAILVLKDAERKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYICILICLVKLGDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYARNGSMEEAESLHLHTLQKGGCPNYKTLEILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGLVLAIAEYLEKDGNLKYANKYITDLRNFGLFSLSLYKILLRMHLSANKPPFHILKMMDEDKIEMDNETLSILKAFTGCVQAEVFGGEAVTWNSVSFLGFFKENFNSYISMYVFRLKQVELKSTGAERFCGI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0827 550 Pfam PPR repeat 348 367 IPR002885 -
Gso4g0827 550 Gene3D Tetratricopeptide repeat domain 240 433 IPR011990 GO:0005515
Gso4g0827 550 PANTHER OS02G0796400 PROTEIN 36 494 - -
Gso4g0827 550 Pfam Pentatricopeptide repeat domain 168 212 IPR002885 -
Gso4g0827 550 PANTHER OS12G0527900 PROTEIN 36 494 - -
Gso4g0827 550 Gene3D Tetratricopeptide repeat domain 33 218 IPR011990 GO:0005515
Gso4g0827 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0827 Gso-Chr4 8754060 8757658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0827 50 448 EF-hand Containing Proteins AT1G02150 31.000 5.04e-68 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0827 - - gmx:100813805 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0827 4 8754060 8757658 Gso4g0827 4 8754060 8757658 ECH
Gso4g0827 4 8754060 8757658 Gso6g0833 6 7929380 7932270 GST