Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0747 ATGGCGGTTTCCGACAGTCCCAGCGGCGGCTCCACGCCACCTCATCAGGAACAACAAGCCAACAGCAAGTACGGTTTCACCAAGCCCCTCTCTCTCGCGGGTCCCACCGACGCTGATCTCCAGCGTAACAACGATTTGGACAAGTTCTTGCTCGATTCGGGTCTCTACGAGAGCAATGAAGAATCCGCTGCGAGGAAAGAGGTTCTTCACCGCCTTGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTAGAGGATGCAAATGCTGTCATTTTTACTTTTGGCTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTAAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATCCTGGCCGAAATGGAAGAAGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATCTCGCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTACACTGAGATGTTTAAAGTTTTGGGCAAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTCTACCCCAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCCCGGGACAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGCTACAACGTTTCGGCAAGTACTCTTCGTGTTATGGTGGACCAATTCTGCTATGGCAATAAGATTTGTGATGAAATTGAGCTTAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATATTTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAATTGCATCAGACACGGATGATTTACTAGCATGGAGGGGATGGGTAGAATCTCGGTTGAGAATGCTTACCCTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCACATGAGTATGTAGACACATCCAAGCCATGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTACATGTACTGGAAGCCAGGGATGGATATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTCGAATGCCAAGGCATATAAGCCATCAAGCTGAAATAACAGGTGATGATGCCACAAACTGCTACTCTGGGCCTGGATTGTCTGAAAGATGCATCAAGAGGAAAAATTACTCTGAAATGGTGGATAAGAAGCCAGACAAACCAGATAAGCGGGCATCTATAAGCCCACAAAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTGGTAAATCAGGTGGTACAGCTCAAATGAGTATTGAGTGTATTAAAGGGGTTAGGTTAGCTGGTTCAACAACCAAGGATGCTAACAGCAATTGTAAAATTAAGTCATCTGATGCACTCCCTGGAAGTGGACTAAGAACTGAGGTAGCTGACATGCAGATTAGTGAAGCAGGCTTTGTTAACACTACACATGATATGTTGAAATCAAGGAGTGTTGAAGTTCCAAATGAGAATGAAGTTGTCAATGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGAATCTACTAACAGCCTGTCAAACTATGAAGAGGGTGATATTGATATGGATCAGCGACTAGACAAAGCATGTAATTTCATCACAAGGGCTGAATGTTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAATTGCGAGGAGGATGAGTTTGGAGTAAATCACATGATATTTGGGAGGTGA 2190 0.4342 MAVSDSPSGGSTPPHQEQQANSKYGFTKPLSLAGPTDADLQRNNDLDKFLLDSGLYESNEESAARKEVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMVDQFCYGNKICDEIELNKAQWSALFQPYIFFEAYKNYLQVDIIASDTDDLLAWRGWVESRLRMLTLKIERDTNGMLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMYWKPGMDIFVSHVRRKQLPAFVFPDGYKRTRMPRHISHQAEITGDDATNCYSGPGLSERCIKRKNYSEMVDKKPDKPDKRASISPQRLECVSPESCTGKSGGTAQMSIECIKGVRLAGSTTKDANSNCKIKSSDALPGSGLRTEVADMQISEAGFVNTTHDMLKSRSVEVPNENEVVNGDKAQDLALDCLESAETESTNSLSNYEEGDIDMDQRLDKACNFITRAECSDYVPNASSQNLNCEEDEFGVNHMIFGR* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0747 729 PANTHER NUCLEAR POLY(A) POLYMERASE 4 15 671 - -
Gso6g0747 729 Gene3D - 25 367 - -
Gso6g0747 729 MobiDBLite consensus disorder prediction 1 28 - -
Gso6g0747 729 Pfam Nucleotidyltransferase domain 98 174 IPR002934 GO:0016779
Gso6g0747 729 PANTHER POLY A POLYMERASE 15 671 - -
Gso6g0747 729 Gene3D Beta Polymerase, domain 2 57 213 IPR043519 -
Gso6g0747 729 CDD NT_PAP_TUTase 64 219 - -
Gso6g0747 729 Pfam Poly(A) polymerase central domain 25 368 IPR007012 GO:0004652|GO:0043631
Gso6g0747 729 SUPERFAMILY Nucleotidyltransferase 22 218 IPR043519 -
Gso6g0747 729 MobiDBLite consensus disorder prediction 1 26 - -
Gso6g0747 729 SUPERFAMILY PAP/OAS1 substrate-binding domain 220 369 - -
Gso6g0747 729 Pfam Poly(A) polymerase predicted RNA binding domain 434 504 IPR007010 GO:0003723|GO:0043631
Gso6g0747 729 Pfam Poly(A) polymerase predicted RNA binding domain 372 430 IPR007010 GO:0003723|GO:0043631
Gso6g0747 729 Gene3D Poly(A) polymerase predicted RNA binding domain 372 487 - -
Gso6g0747 729 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 372 497 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0747 Gso-Chr6 6902228 6908507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0747 K14376 - gmx:100802620 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0740 4 7340018 7346374 Gso6g0747 6 6902228 6908507 GST