Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0740 ATGGCGGTTTCCGACAGTCCCAGCGGCGGCTCCACGCCACCTCAACAGGAACAACAACCCAACAAGTACGCTTTCACCAAGCCCCTCTCTCTCGCGGGTCCCACCCACGCCGATCTCCAGCGTAACAACGAATTGGACAAGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGAAGAATCCGCGGCGAGGAAAGAGGTTCTTCACCGCCTTGATCAGATTGTGAAAAACTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTTACTTTTGGCTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTTTTTGTCATTTTGCATAACATCCTGGCCGAAATGGAAGAGGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATTTCGCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTGCATTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTCTACCCTAATGCAATCCCCAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCCCGAGACAGATTTCACACTATGCCAATAATTACTCCCGCATACCCTTGCATGAATTCAAGCTACAATGTTTCGGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGAGCTTAATAAGGCCCAGTGGAGCGCACTTTTTCAGCCTTATATTTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAATTGCATCAGACGCGGATGATTTACTAGCATGGAGGGGCTGGGTAGAATCTCGGTTGAGACTGCTTACCCTGAAGATAGAACGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCAAATGAGTATGTAGACACATCCAAGCTGTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTACATGTACTGGAAGCCAGGGATGGATATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGGTGGTTACAAACGCACTCGAATGCCAAGGCATATTAGCCATCAAGCTGAAAAAACAGGTGATGATGCCACTAAGTGCTACTCTGGGTCTGGGTCTGGGTCGTCTGAAAGATGCATCAAGAGGAAAAGTTGCCCTGAAATGGTGGATAAGAAGCCAGGCAAACCAGATAAGCGGGCATCTATTAGCCCACAAAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAACTCAAATGAGTATTGAGTGTATCGAAGTGGTTAGGTTAGCTGGTTCAACAACCAAGGATGCTAACGACAATTGTGAAGTTAAGTCATCTGATGCACTCCCAGGAAGTGGACTAAGCACTGAGGTAGCTGACATGCAGATTAGTGAACCGGGCTTTGTTGACACCACACATGATATGTTGAAATCAAGGAGTGTTGAAATTCCAAATGAGAATGGAGTTCTCAATGGGGACAAAGCTCAGGATCTAGCTTTAGATTGCTTGGAAAGTGCAGAAACTGAATCTACTAACAGCTTGTCAAACTATAAAGAGGGAGACAATGATACGGATCAGCGACTAGACAAAGAATGTAATTTCATCCCAAGGGCTGAATGTTCAGATTATGTACCAAATGCCAGTTCCCAGAACCTCAATTGCGAGATGTCAGACTCGGTAGTGCTGTATAAATTGAAGAAGGGGCTAGGATGA 2199 0.4407 MAVSDSPSGGSTPPQQEQQPNKYAFTKPLSLAGPTHADLQRNNELDKFLLDSGLYESNEESAARKEVLHRLDQIVKNWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFVILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTALRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIELNKAQWSALFQPYIFFEAYKNYLQVDIIASDADDLLAWRGWVESRLRLLTLKIERDTNGMLQCHPYPNEYVDTSKLCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMYWKPGMDIFVSHVRRKQLPAFVFPGGYKRTRMPRHISHQAEKTGDDATKCYSGSGSGSSERCIKRKSCPEMVDKKPGKPDKRASISPQRLECVSPESCTSKSGGTTQMSIECIEVVRLAGSTTKDANDNCEVKSSDALPGSGLSTEVADMQISEPGFVDTTHDMLKSRSVEIPNENGVLNGDKAQDLALDCLESAETESTNSLSNYKEGDNDTDQRLDKECNFIPRAECSDYVPNASSQNLNCEMSDSVVLYKLKKGLG* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0740 732 PANTHER POLY A POLYMERASE 12 624 - -
Gso4g0740 732 Gene3D - 26 366 - -
Gso4g0740 732 CDD NT_PAP_TUTase 63 218 - -
Gso4g0740 732 Gene3D Poly(A) polymerase predicted RNA binding domain 371 486 - -
Gso4g0740 732 Pfam Poly(A) polymerase predicted RNA binding domain 434 503 IPR007010 GO:0003723|GO:0043631
Gso4g0740 732 Pfam Poly(A) polymerase predicted RNA binding domain 371 430 IPR007010 GO:0003723|GO:0043631
Gso4g0740 732 SUPERFAMILY Nucleotidyltransferase 20 217 IPR043519 -
Gso4g0740 732 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 371 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Gso4g0740 732 PANTHER NUCLEAR POLY(A) POLYMERASE 4 12 624 - -
Gso4g0740 732 MobiDBLite consensus disorder prediction 1 22 - -
Gso4g0740 732 MobiDBLite consensus disorder prediction 513 535 - -
Gso4g0740 732 Pfam Poly(A) polymerase central domain 26 367 IPR007012 GO:0004652|GO:0043631
Gso4g0740 732 SUPERFAMILY PAP/OAS1 substrate-binding domain 219 368 - -
Gso4g0740 732 Pfam Nucleotidyltransferase domain 97 173 IPR002934 GO:0016779
Gso4g0740 732 Gene3D Beta Polymerase, domain 2 56 212 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0740 Gso-Chr4 7340018 7346374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0740 K14376 - gmx:100819294 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0740 4 7340018 7346374 Gso6g0747 6 6902228 6908507 GST