Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0689 ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTTGAGTTTTATTTCGGCGATAGCAACCTTCTCACCGATGGTTTCATGAGGAATAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGAAGAAGTGGCCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCAGCTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCGCCATTTGAACATGATCTGAAGCTTGAAGATGTGGAGAAACTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTAGAATTTTCTTCAGAGGAAGATGTAGAAAAGGTCATGAAGGAAAAATTGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGATAGAGAAAAAGAACTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCAGCAGAATAACACAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAAAATGGTGTTGACCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCACTCTGAAATTACTTCAGGAGAAAATGACCAAATGGTAACAGAAAATGTTGGCGATGATGAAGAAAACTCTGAGACGAAAGAAGCAAAGGAAACTGAAAGTGAAGAAAACAATGGGATGAAAGAAGGAAAGGTAACCGAAGGTGAAGACAAGAAACGACAAGCTGGTGGAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATTCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAACCTGCTTCGTGGTAATCAAGGCAAGCACCGTGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGCAAACATGCACGCTCTAGAGATAACGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGATGCTGCATAA 1383 0.4143 MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSEDGKKVGRKTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKLFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSEEDVEKVMKEKLVYAGAELELKPKKDFDADREKELEDYKKSRPPVGSNQQNNTNVEEDYPKGLIIAFKLKSISDEIPSEQNGVDQQAKDNSVVSKTDENPHSEITSGENDQMVTENVGDDEENSETKEAKETESEENNGMKEGKVTEGEDKKRQAGGKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWNLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRDNGSRDRRNKAQKVDAA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0689 460 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso6g0689 460 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso6g0689 460 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso6g0689 460 MobiDBLite consensus disorder prediction 194 223 - -
Gso6g0689 460 MobiDBLite consensus disorder prediction 437 460 - -
Gso6g0689 460 MobiDBLite consensus disorder prediction 289 320 - -
Gso6g0689 460 MobiDBLite consensus disorder prediction 244 279 - -
Gso6g0689 460 SUPERFAMILY RNA-binding domain, RBD 337 421 IPR035979 GO:0003676
Gso6g0689 460 MobiDBLite consensus disorder prediction 420 460 - -
Gso6g0689 460 Gene3D - 108 206 IPR012677 -
Gso6g0689 460 ProSiteProfiles xRRM domain profile. 316 446 IPR014886 GO:0003723
Gso6g0689 460 CDD LA_like_plant 10 99 - -
Gso6g0689 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Gso6g0689 460 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Gso6g0689 460 Pfam RNA binding motif 337 429 IPR014886 GO:0003723
Gso6g0689 460 Gene3D - 326 429 IPR012677 -
Gso6g0689 460 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Gso6g0689 460 SMART la 8 100 IPR006630 -
Gso6g0689 460 SMART rrm1_1 116 188 IPR000504 GO:0003723
Gso6g0689 460 SMART rrm1_1 328 392 IPR000504 GO:0003723
Gso6g0689 460 PANTHER OS02G0610400 PROTEIN 4 460 - -
Gso6g0689 460 PANTHER LUPUS LA PROTEIN-RELATED 4 460 IPR045180 -
Gso6g0689 460 MobiDBLite consensus disorder prediction 244 320 - -
Gso6g0689 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Gso6g0689 460 Pfam La domain 14 84 IPR006630 -
Gso6g0689 460 Gene3D - 6 107 IPR036388 -
Gso6g0689 460 MobiDBLite consensus disorder prediction 209 223 - -
Gso6g0689 460 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0689 Gso-Chr6 6372601 6376104 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0689 K11090 - gmx:100786016 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0688 4 6724890 6728631 Gso6g0689 6 6372601 6376104 GST