Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0688 ATGGCGACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTCGAGTTTTATTTCGGCGACAGCAACCTTCTCACCGATGGTTTCATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAACACCTTAATTTGGGTGATGTTAAGCCCGATGAAGTGGCCCAAGAAACCGTGAATACTGTTGCTCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGATGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGAAATTTTTTGGTCAATATGCAAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTGTTCTGTGGCACTGCTCTTGTAGAATTCTCTTCAGAGGAAGAAGTAGAAAAGGTTATGAAGGAAAAAATGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGAGAGAGAAAAAGAATTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCACCAGAATAGCTCAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAATTAAAGAGCATTTCAGAAGAAATTCCGTCTGAACAAAATGGTGTTGATCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCGCTCTGAAATTACTTCTGGGGAAAATGATCAAAAGGTAACAGAAAATGTTGGTGTTGATGAAGAAAAAAATGAGATGAAAGAAGCAAAGGAAACTGTAAATGAAGAGGACAATGAGATGAAAGAAGCAGAAGAAACTGAAAGTGAAGACAACACTGACATGAAAGAAGCAAAGGGAACTGAAAGTGAAGACAACAATGGGATGAAAGAAGGAAAGGTAACCAAAGATGAAGAAAAGAAACAACAAGCTGGTGAAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACCGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATCCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAGCCTGCTTCGTGGTAATCAAGGCAAACACCGAGAATTCAAGAATAAGCAAGGAAGGGGAGGATGGCATGGGAGAGGGGGCAAACATGCACGCTCTAGAGATAATGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGGTGGTGCATAA 1467 0.4076 MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRKSITESEDGMISLALICSFNRMRKHLNLGDVKPDEVAQETVNTVAQTLRNSASLKVSEDGKKVGRKTELPKLEDVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKLFCGTALVEFSSEEEVEKVMKEKMVYAGAELELKPKKDFDAEREKELEDYKKSRPPVGSNHQNSSNVEEDYPKGLIIAFKLKSISEEIPSEQNGVDQQAKDNSVVSKTDENPRSEITSGENDQKVTENVGVDEEKNEMKEAKETVNEEDNEMKEAEETESEDNTDMKEAKGTESEDNNGMKEGKVTKDEEKKQQAGEKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWSLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRDNGSRDRRNKAQKVGGA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0688 488 MobiDBLite consensus disorder prediction 194 223 - -
Gso4g0688 488 SUPERFAMILY RNA-binding domain, RBD 365 448 IPR035979 GO:0003676
Gso4g0688 488 MobiDBLite consensus disorder prediction 317 350 - -
Gso4g0688 488 MobiDBLite consensus disorder prediction 280 303 - -
Gso4g0688 488 Gene3D - 338 457 IPR012677 -
Gso4g0688 488 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Gso4g0688 488 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso4g0688 488 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso4g0688 488 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gso4g0688 488 CDD LA_like_plant 10 99 - -
Gso4g0688 488 MobiDBLite consensus disorder prediction 243 279 - -
Gso4g0688 488 Pfam RNA binding motif 365 457 IPR014886 GO:0003723
Gso4g0688 488 Coils Coil 282 315 - -
Gso4g0688 488 Pfam La domain 14 84 IPR006630 -
Gso4g0688 488 MobiDBLite consensus disorder prediction 194 209 - -
Gso4g0688 488 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Gso4g0688 488 PANTHER OS02G0610400 PROTEIN 4 486 - -
Gso4g0688 488 Gene3D - 2 104 IPR036388 -
Gso4g0688 488 ProSiteProfiles xRRM domain profile. 344 474 IPR014886 GO:0003723
Gso4g0688 488 MobiDBLite consensus disorder prediction 465 488 - -
Gso4g0688 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Gso4g0688 488 MobiDBLite consensus disorder prediction 448 488 - -
Gso4g0688 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Gso4g0688 488 Gene3D - 107 206 IPR012677 -
Gso4g0688 488 MobiDBLite consensus disorder prediction 243 352 - -
Gso4g0688 488 SUPERFAMILY RNA-binding domain, RBD 108 192 IPR035979 GO:0003676
Gso4g0688 488 SMART la 8 100 IPR006630 -
Gso4g0688 488 PANTHER LUPUS LA PROTEIN-RELATED 4 486 IPR045180 -
Gso4g0688 488 SMART rrm1_1 356 420 IPR000504 GO:0003723
Gso4g0688 488 SMART rrm1_1 116 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0688 Gso-Chr4 6724890 6728631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0688 K11090 - gmx:100803099 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0688 4 6724890 6728631 Gso6g0689 6 6372601 6376104 GST